HY5 Contributes to Light-Regulated Root System Architecture Under a Root-Covered Culture System

Fine-Tuning Stomatal Movement Through Small Signaling Peptides

(2019) Xinyun Qu et al.   Frontiers in Plant Science

Two Arabidopsis Receptor-like Cytoplasmic Kinases SZE1 and SZE2 Associate with the ZAR1–ZED1 Complex and Are Required for Effector-Triggered Immunity

(2019) Cheng Liu et al.   Molecular Plant

Biosynthesis of DHGA12 and its roles in Arabidopsis seedling establishment

(2019) Hao Liu et al.   Nature Communications

Beyond Light: Insights Into the Role of Constitutively Photomorphogenic1 in Plant Hormonal Signaling

(2019) Wenjing Wang et al.   Frontiers in Plant Science

Cell death regulation but not abscisic acid signaling is required for the enhanced Botrytis immunity in cuticle permeable mutants

(2019) Fuqiang Cui et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comprehensive expression analysis of Arabidopsis GA2-oxidase genes and their functional insights

(2019) Chen Li et al.   PLANT SCIENCE

The Arabidopsis MYB transcription factor, MYB111 modulates salt responses by regulating flavonoid biosynthesis

(2019) Baozhu Li et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

A methionine- R -sulfoxide reductase, OsMSRB5, is required for rice defense against copper toxicity

(2018) Tengwei Xiao et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Glutathione S-transferases modulate Cu tolerance in Oryza sativa

(2018) Lu Li et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Long-distance ABA transport can mediate distal tissue responses by affecting local ABA concentrations

(2018) Wenrao Li et al.   Journal of Integrative Plant Biology

Far-Red Light Detection in the Shoot Regulates Lateral Root Development through the HY5 Transcription Factor

(2018) Kasper van Gelderen et al.   PLANT CELL

A Membrane-Bound NAC-Like Transcription Factor OsNTL5 Represses the Flowering in Oryza sativa

(2018) Siyi Guo et al.   Frontiers in Plant Science

BIGGER ORGANS and ELEPHANT EAR-LIKE LEAF1 control organ size and floral organ internal asymmetry in pea

(2018) Xin Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Database Resources of the BIG Data Center in 2019

(2018) et al.   NUCLEIC ACIDS RESEARCH

CLE9 peptide-induced stomatal closure is mediated by abscisic acid, hydrogen peroxide, and nitric oxide in Arabidopsis thaliana

(2018) Luosha Zhang et al.   PLANT CELL AND ENVIRONMENT

Regulation of compound leaf development in mungbean (Vigna radiata L.) by CUP-SHAPED COTYLEDON/NO APICAL MERISTEM (CUC/NAM) gene

(2018) Keyuan Jiao et al.   PLANTA

Characterization and functional analysis of four HYH splicing variants in Arabidopsis hypocotyl elongation

(2017) Chen Li et al.   GENE

Activation of gibberellin 20-oxidase 2 undermines auxin-dependent root and root hair growth in NaCl-stressed Arabidopsis seedlings

(2017) Shufang Lv et al.   PLANT GROWTH REGULATION

Seedling Establishment: A Dimmer Switch-Regulated Process between Dark and Light Signaling

(2017) Charlotte M. M. Gommers et al.   PLANT PHYSIOLOGY

Light Signaling, Root Development, and Plasticity

(2017) Kasper van Gelderen et al.   PLANT PHYSIOLOGY

Dissection of HY5/HYH expression in Arabidopsis reveals a root-autonomous HY5-mediated photomorphogenic pathway

(2017) Yonghong Zhang et al.   PLoS One

HY5, a positive regulator of light signaling, negatively controls the unfolded protein response inArabidopsis

(2017) Ganesh M. Nawkar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Light perception in aerial tissues enhances DWF4 accumulation in root tips and induces root growth

(2017) Jun Sakaguchi et al.   Scientific Reports

GSA: Genome Sequence Archive *

(2017) Yanqing Wang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Shoot-to-Root Mobile Transcription Factor HY5 Coordinates Plant Carbon and Nitrogen Acquisition

(2016) Xiangbin Chen et al.   CURRENT BIOLOGY

The Multifaceted Roles of HY5 in Plant Growth and Development

(2016) Sreeramaiah N. Gangappa et al.   Molecular Plant

Flavonols Mediate Root Phototropism and Growth through Regulation of Proliferation-to-Differentiation Transition

(2016) Javier Silva-Navas et al.   PLANT CELL

AIK1, A Mitogen-Activated Protein Kinase, Modulates Abscisic Acid Responses through the MKK5-MPK6 Kinase Cascade

(2016) Kun Li et al.   PLANT PHYSIOLOGY

Stem-piped light activates phytochrome B to trigger light responses in Arabidopsis thaliana roots

(2016) H.-J. Lee et al.   Science Signaling

Stem-piped light activates phytochrome B to trigger light responses in Arabidopsis thaliana roots

(2016) H.-J. Lee et al.   Science Signaling

Regulation of plant root system architecture: implications for crop advancement

(2015) Eric D Rogers et al.   CURRENT OPINION IN BIOTECHNOLOGY

Plant hormone cross-talk: the pivot of root growth

(2015) Elena Pacifici et al.   JOURNAL OF EXPERIMENTAL BOTANY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

NITRIC OXIDE-ASSOCIATED PROTEIN1 (AtNOA1) is essential for salicylic acid-induced root waving inArabidopsis thaliana

(2015) Xiang Zhao et al.   NEW PHYTOLOGIST

D-Root: a system for cultivating plants with the roots in darkness or under different light conditions

(2015) Javier Silva-Navas et al.   PLANT JOURNAL

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems

(2015) Rubén Rellán-Álvarez et al.   eLife

Corrigendum: How and why do root apices sense light under the soil surface?

(2015) Mei Mo et al.   Frontiers in Plant Science

Adventitious Roots and Lateral Roots: Similarities and Differences

(2014) Catherine Bellini et al.   Annual Review of Plant Biology

jvenn: an interactive Venn diagram viewer

(2014) Philippe Bardou et al.   BMC BIOINFORMATICS

MPK6 controls H2O2-induced root elongation by mediating Ca2+influx across the plasma membrane of root cells inArabidopsisseedlings

(2014) Shuan Han et al.   NEW PHYTOLOGIST

A Receptor-Like Kinase Mediates Ammonium Homeostasis and Is Important for the Polar Growth of Root Hairs in Arabidopsis

(2014) L. Bai et al.   PLANT CELL

AtrbohD and AtrbohF negatively regulate lateral root development by changing the localized accumulation of superoxide in primary roots of Arabidopsis

(2014) Ning Li et al.   PLANTA

Phytochrome controls alternative splicing to mediate light responses inArabidopsis

(2014) Hiromasa Shikata et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Periodic root branching inArabidopsisrequires synthesis of an uncharacterized carotenoid derivative

(2014) Jaimie M. Van Norman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Light as stress factor to plant roots – case of root halotropism

(2014) Ken Yokawa et al.   Frontiers in Plant Science

AtrbohD and AtrbohF positively regulate abscisic acid-inhibited primary root growth by affecting Ca2+ signalling and auxin response of roots in Arabidopsis

(2013) Yiheng Jiao et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative transcriptomics as a tool for the identification of root branching genes in maize

(2013) Leentje Jansen et al.   PLANT BIOTECHNOLOGY JOURNAL

RootScape: A Landmark-Based System for Rapid Screening of Root Architecture in Arabidopsis

(2013) D. Ristova et al.   PLANT PHYSIOLOGY

Root photomorphogenesis in laboratory-maintained Arabidopsis seedlings

(2013) Ken Yokawa et al.   TRENDS IN PLANT SCIENCE

An improved agar-plate method for studying root growth and response of Arabidopsis thaliana

(2013) Weifeng Xu et al.   Scientific Reports

COP1 mediates the coordination of root and shoot growth by light through modulation of PIN1- and PIN2-dependent auxin transport in Arabidopsis

(2012) M. Sassi et al.   DEVELOPMENT

Molecular Interactions of GBF1 with HY5 and HYH Proteins during Light-mediated Seedling Development inArabidopsis thaliana

(2012) Aparna Singh et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Photomorphogenesis—from One Photoreceptor to 14: 40 Years of Progress

(2012) Winslow R. Briggs et al.   Molecular Plant

Root system architecture: insights from Arabidopsis and cereal crops

(2012) S. Smith et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genomic basis for light control of plant development

(2012) Jigang Li et al.   Protein & Cell

A Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture

(2011) Guillaume Lobet et al.   PLANT PHYSIOLOGY

Flavonoids: New Roles for Old Molecules

(2010) Charles S. Buer et al.   Journal of Integrative Plant Biology

Arabidopsis Transcription Factor ELONGATED HYPOCOTYL5 Plays a Role in the Feedback Regulation of Phytochrome A Signaling

(2010) J. Li et al.   PLANT CELL

SHORT-ROOT Regulates Primary, Lateral, and Adventitious Root Development in Arabidopsis

(2010) M. Lucas et al.   PLANT PHYSIOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Light Regulation of Gibberellin Biosynthesis in Pea Is Mediated through the COP1/HY5 Pathway

(2009) J. L. Weller et al.   PLANT CELL

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Light Plays an Essential Role in Intracellular Distribution of Auxin Efflux Carrier PIN2 in Arabidopsis thaliana

(2008) Ashverya Laxmi et al.   PLoS One