Phage integration alters the respiratory strategy of its host

Regulated Stochasticity in a Bacterial Signaling Network Permits Tolerance to a Rapid Environmental Change

(2018) Jeffrey N. Carey et al.   CELL

UniProt: a worldwide hub of protein knowledge

(2018)   NUCLEIC ACIDS RESEARCH

Lysogeny in nature: mechanisms, impact and ecology of temperate phages

(2017) Cristina Howard-Varona et al.   ISME Journal

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

The Significance of Mutualistic Phages for Bacterial Ecology and Evolution

(2016) Nancy Obeng et al.   TRENDS IN MICROBIOLOGY

Contributions of P2- and P22-like prophages to understanding the enormous diversity and abundance of tailed bacteriophages

(2016) Sherwood R. Casjens et al.   VIROLOGY

Trimethylamine N-Oxide: The Good, the Bad and the Unknown

(2016) Manuel Velasquez et al.   Toxins

Oxygen-Dependent Cell-to-Cell Variability in the Output of the Escherichia coli Tor Phosphorelay

(2015) Manuela Roggiani et al.   JOURNAL OF BACTERIOLOGY

A new perspective on lysogeny: prophages as active regulatory switches of bacteria

(2015) Ron Feiner et al.   NATURE REVIEWS MICROBIOLOGY

Mechanism of Prominent Trimethylamine Oxide (TMAO) Accumulation in Hemodialysis Patients

(2015) Xin Hai et al.   PLoS One

Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources

(2014) Gene-Wei Li et al.   CELL

When a virus is not a parasite: the beneficial effects of prophages on bacterial fitness

(2014) Joseph Bondy-Denomy et al.   JOURNAL OF MICROBIOLOGY

Understanding the enormous diversity of bacteriophages: The tailed phages that infect the bacterial family Enterobacteriaceae

(2014) Julianne H. Grose et al.   VIROLOGY

BLAST: a more efficient report with usability improvements

(2013) Grzegorz M. Boratyn et al.   NUCLEIC ACIDS RESEARCH

Importance of prophages to evolution and virulence of bacterial pathogens

(2013) Louis-Charles Fortier et al.   Virulence

Prophage Excision Activates Listeria Competence Genes that Promote Phagosomal Escape and Virulence

(2012) Lev Rabinovich et al.   CELL

The ClermontEscherichia coliphylo-typing method revisited: improvement of specificity and detection of new phylo-groups

(2012) Olivier Clermont et al.   Environmental Microbiology Reports

BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata

(2011) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes

(2010) John HE Nash et al.   BMC GENOMICS

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

Cryptic prophages help bacteria cope with adverse environments

(2010) Xiaoxue Wang et al.   Nature Communications

Escherichia coli isolated from a Crohn's disease patient adheres, invades, and induces inflammatory responses in polarized intestinal epithelial cells

(2007) Tonyia Eaves-Pyles et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY