Yeast PAF1 complex counters the pol III accumulation and replication stress on the tRNA genes

Interactome of the yeast RNA polymerase III transcription machinery constitutes several chromatin modifiers and regulators of the genes transcribed by RNA polymerase II

(2018) Pratibha Bhalla et al.   GENE

Paf1 Has Distinct Roles in Transcription Elongation and Differential Transcript Fate

(2017) Harry Fischl et al.   MOLECULAR CELL

Emerging Insights into the Roles of the Paf1 Complex in Gene Regulation

(2017) S. Branden Van Oss et al.   TRENDS IN BIOCHEMICAL SCIENCES

Novel layers of RNA polymerase III control affecting tRNA gene transcription in eukaryotes

(2017) Ewa Leśniewska et al.   Open Biology

RNA-dependent chromatin association of transcription elongation factors and Pol II CTD kinases

(2017) Sofia Battaglia et al.   eLife

Mec1, INO80, and the PAF1 complex cooperate to limit transcription replication conflicts through RNAPII removal during replication stress

(2016) Jérôme Poli et al.   GENES & DEVELOPMENT

Global analysis of transcriptionally engaged yeast RNA polymerase III reveals extended tRNA transcripts

(2016) Tomasz W. Turowski et al.   GENOME RESEARCH

Decoding the principles underlying the frequency of association with nucleoli for RNA polymerase III–transcribed genes in budding yeast

(2016) Praveen Belagal et al.   MOLECULAR BIOLOGY OF THE CELL

The Histone Modification Domain of Paf1 Complex Subunit Rtf1 Directly Stimulates H2B Ubiquitylation through an Interaction with Rad6

(2016) S. Branden Van Oss et al.   MOLECULAR CELL

Evolving specificity of tRNA 3-methyl-cytidine-32 (m3C32) modification: a subset of tRNAsSerrequiresN6-isopentenylation of A37

(2016) Aneeshkumar G. Arimbasseri et al.   RNA

Absence of Non-histone Protein Complexes at Natural Chromosomal Pause Sites Results in Reduced Replication Pausing in Aging Yeast Cells

(2016) Marleny Cabral et al.   Cell Reports

Yeast Bud27 modulates the biogenesis of Rpc128 and Rpc160 subunits and the assembly of RNA polymerase III

(2015) Dipti Vinayak Vernekar et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

PAF1, a Molecular Regulator of Promoter-Proximal Pausing by RNA Polymerase II

(2015) Fei Xavier Chen et al.   CELL

Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C

(2015) Tsung-Han S. Hsieh et al.   CELL

The Paf1 complex factors Leo1 and Paf1 promote local histone turnover to modulate chromatin states in fission yeast

(2015) L. Sadeghi et al.   EMBO REPORTS

High-Resolution Chromatin Dynamics during a Yeast Stress Response

(2015) Assaf Weiner et al.   MOLECULAR CELL

RNA polymerase II-associated factor 1 regulates the release and phosphorylation of paused RNA polymerase II

(2015) M. Yu et al.   SCIENCE

Topologically associating domains are stable units of replication-timing regulation

(2014) Benjamin D. Pope et al.   NATURE

A unique nucleosome arrangement, maintained actively by chromatin remodelers facilitates transcription of yeast tRNA genes

(2013) Yatendra Kumar et al.   BMC GENOMICS

The Recruitment of theSaccharomyces cerevisiaePaf1 Complex to Active Genes Requires a Domain of Rtf1 That Directly Interacts with the Spt4-Spt5 Complex

(2013) Manasi K. Mayekar et al.   MOLECULAR AND CELLULAR BIOLOGY

Transcription-replication encounters, consequences and genomic instability

(2013) Anne Helmrich et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Global ‘bootprinting’ reveals the elastic architecture of the yeast TFIIIB–TFIIIC transcription complex in vivo

(2013) V. Nagarajavel et al.   NUCLEIC ACIDS RESEARCH

The PAF Complex and Prf1/Rtf1 Delineate Distinct Cdk9-Dependent Pathways Regulating Transcription Elongation in Fission Yeast

(2013) Jean Mbogning et al.   PLoS Genetics

A Compendium of Nucleosome and Transcript Profiles Reveals Determinants of Chromatin Architecture and Transcription

(2013) Harm van Bakel et al.   PLoS Genetics

Transcription reinitiation by RNA polymerase III

(2012) Giorgio Dieci et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Identification of RNA polymerase III-transcribed genes in eukaryotic genomes

(2012) Giorgio Dieci et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Regulation of pol III transcription by nutrient and stress signaling pathways

(2012) Robyn D. Moir et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

The many roles of the conserved eukaryotic Paf1 complex in regulating transcription, histone modifications, and disease states

(2012) Brett N. Tomson et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Maf1, a general negative regulator of RNA polymerase III in yeast

(2012) Magdalena Boguta   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Paf1 Restricts Gcn4 Occupancy and Antisense Transcription at the ARG1 Promoter

(2012) E. M. Crisucci et al.   MOLECULAR AND CELLULAR BIOLOGY

Conservation between the RNA Polymerase I, II, and III Transcription Initiation Machineries

(2012) Alessandro Vannini et al.   MOLECULAR CELL

The Paf1 Complex Represses SER3 Transcription in Saccharomyces cerevisiae by Facilitating Intergenic Transcription-Dependent Nucleosome Occupancy of the SER3 Promoter

(2011) Justin A. Pruneski et al.   EUKARYOTIC CELL

Diverse Roles of RNA Polymerase II-associated Factor 1 Complex in Different Subpathways of Nucleotide Excision Repair

(2011) Danielle Tatum et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Maf1 Protein, Repressor of RNA Polymerase III, Indirectly Affects tRNA Processing

(2011) Iwona Karkusiewicz et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Paf1 complex: Platform or player in RNA polymerase II transcription?

(2010) Judith A. Jaehning   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

The Human PAF1 Complex Acts in Chromatin Transcription Elongation Both Independently and Cooperatively with SII/TFIIS

(2010) Jaehoon Kim et al.   CELL

Pol II and its associated epigenetic marks are present at Pol III–transcribed noncoding RNA genes

(2010) Artem Barski et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Systematic identification of fragile sites via genome-wide location analysis of γ-H2AX

(2010) Rachel K Szilard et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors

(2010) Andrew J Oler et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Replication stress checkpoint signaling controls tRNA gene transcription

(2010) Vesna C Nguyen et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells

(2010) Zarmik Moqtaderi et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Fragile Genomic Sites Are Associated with Origins of Replication

(2009) Sara C. Di Rienzi et al.   Genome Biology and Evolution

Highly Transcribed RNA Polymerase II Genes Are Impediments to Replication Fork Progression in Saccharomyces cerevisiae

(2009) Anna Azvolinsky et al.   MOLECULAR CELL

The Paf1 complex is required for efficient transcription elongation by RNA polymerase I

(2009) Y. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Paf1 complex promotes displacement of histones upon rapid induction of transcription by RNA polymerase II

(2008) Heather A Marton et al.   BMC MOLECULAR BIOLOGY

The Temporal Program of Chromosome Replication: Genomewide Replication in clb5  Saccharomyces cerevisiae

(2008) H. J. McCune et al.   GENETICS

Chromatin Structure and Expression of a Gene Transcribed by RNA Polymerase III Are Independent of H2A.Z Deposition

(2008) A. G. Arimbasseri et al.   MOLECULAR AND CELLULAR BIOLOGY