RNA-Seq analysis of ileocecal valve and peripheral blood from Holstein cattle infected with Mycobacterium avium subsp. paratuberculosis revealed dysregulation of the CXCL8/IL8 signaling pathway

Simultaneous measurement of antigen-induced CXCL10 and IFN-γ enhances test sensitivity for bovine TB detection in cattle

(2019) Michael Coad et al.   VETERINARY MICROBIOLOGY

Mycobacterium avium subspecies paratuberculosis is able to manipulate host lipid metabolism and accumulate cholesterol within macrophages

(2019) Matt D. Johansen et al.   MICROBIAL PATHOGENESIS

Economic impact of paratuberculosis in dairy cattle herds: a review 

(2018) L. Hasonova et al.   VETERINARNI MEDICINA

Short communication: Vitamin D status and responses in dairy cows naturally infected with Mycobacterium avium ssp. paratuberculosis

(2018) J.R. Stabel et al.   JOURNAL OF DAIRY SCIENCE

Batf2 differentially regulates tissue immunopathology in Type 1 and Type 2 diseases

(2018) Reto Guler et al.   Mucosal Immunology

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

(2018) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Differential gene expression in Mycobacterium bovis challenged monocyte-derived macrophages of cattle

(2017) Sanjeev Kumar Shukla et al.   MICROBIAL PATHOGENESIS

Johne’s disease in cattle: an in vitro model to study early response to infection of Mycobacterium avium subsp. paratuberculosis using RNA-seq.

(2017) Rosanna Marino et al.   MOLECULAR IMMUNOLOGY

The effect of paratuberculosis on milk yield—A systematic review and meta-analysis

(2016) Conor G. McAloon et al.   JOURNAL OF DAIRY SCIENCE

Mycobacterium tuberculosis Infection Manipulates the Glycosylation Machinery and the N-Glycoproteome of Human Macrophages and Their Microparticles

(2016) Nathan J. Hare et al.   JOURNAL OF PROTEOME RESEARCH

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Added Value of IP-10 as a Read-Out of Mycobacterium tuberculosis

(2016) Synne Jenum et al.   PEDIATRIC INFECTIOUS DISEASE JOURNAL

Transcriptional Profiling of Ileocecal Valve of Holstein Dairy Cows Infected with Mycobacterium avium subsp. Paratuberculosis

(2016) Randy J. Hempel et al.   PLoS One

Composition and Potency Characterization of Mycobacterium avium subsp. paratuberculosis Purified Protein Derivatives

(2016) Randal T. Capsel et al.   PLoS One

Transcriptome changes upon in vitro challenge with Mycobacterium bovis in monocyte-derived macrophages from bovine tuberculosis-infected and healthy cows

(2015) Jingjun Lin et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

Targeting Batf2 for infectious diseases and cancer

(2015) Reto Guler et al.   Oncotarget

Analysis of the Bovine Monocyte-Derived Macrophage Response to Mycobacterium avium Subspecies Paratuberculosis Infection Using RNA-seq

(2015) Maura E. Casey et al.   Frontiers in Immunology

Metabolomic Profiling in Cattle Experimentally Infected with Mycobacterium avium subsp. paratuberculosis

(2014) Jeroen De Buck et al.   PLoS One

Paratuberculosis Vaccination Causes Only Limited Cross-Reactivity in the Skin Test for Diagnosis of Bovine Tuberculosis

(2013) Joseba M. Garrido et al.   PLoS One

Anti-Inflammatory and Antiapoptotic Responses to Infection: A Common Denominator of Human and Bovine Macrophages Infected withMycobacterium aviumSubsp.paratuberculosis

(2013) Naiara Abendaño et al.   Biomed Research International

Expression of genes associated with the antigen presentation and processing pathway are consistently regulated in early Mycobacterium avium subsp. paratuberculosis infection

(2012) Auriol C. Purdie et al.   COMPARATIVE IMMUNOLOGY MICROBIOLOGY AND INFECTIOUS DISEASES

A commentary on current perspectives onMycobacterium aviumsubsp.paratuberculosis, Johne’s disease and Crohn’s disease: A review by Over et al. (2011)

(2012) Ros Robertson et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Immunization of adult dairy cattle with a new heat-killed vaccine is associated with longer productive life prior to cows being sent to slaughter with suspected paratuberculosis

(2012) M. Alonso-Hearn et al.   JOURNAL OF DAIRY SCIENCE

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Association of single nucleotide polymorphisms in the ANKRA2 and CD180 genes with bovine respiratory disease and presence of Mycobacterium avium subsp. paratuberculosis1

(2011) E. Casas et al.   ANIMAL GENETICS

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Control of Paratuberculosis in Dairy Herds

(2011) Franklyn Garry   VETERINARY CLINICS OF NORTH AMERICA-FOOD ANIMAL PRACTICE

Pathogenesis of Paratuberculosis

(2011) Raymond W. Sweeney   VETERINARY CLINICS OF NORTH AMERICA-FOOD ANIMAL PRACTICE

Epidemiology and Economics of Paratuberculosis

(2011) Jason E. Lombard   VETERINARY CLINICS OF NORTH AMERICA-FOOD ANIMAL PRACTICE

A novel interface consisting of homologous immunoglobulin superfamily members with multiple functions

(2010) Zhuwei Xu et al.   Cellular & Molecular Immunology

Peyer's Patch-Deficient Mice Demonstrate That Mycobacterium avium subsp. paratuberculosis Translocates across the Mucosal Barrier via both M Cells and Enterocytes but Has Inefficient Dissemination

(2010) L. E. Bermudez et al.   INFECTION AND IMMUNITY

Effect of Johne's disease status on reproduction and culling in dairy cattle

(2010) R.L. Smith et al.   JOURNAL OF DAIRY SCIENCE

Emerging Roles of FAM14 Family Members (G1P3/ISG 6–16 and ISG12/IFI27) in Innate Immunity and Cancer

(2010) Venugopalan Cheriyath et al.   JOURNAL OF INTERFERON AND CYTOKINE RESEARCH

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Transcript length bias in RNA-seq data confounds systems biology

(2009) Alicia Oshlack et al.   Biology Direct

Capture of heat-killed Mycobacterium bovis bacillus Calmette-Guerin by intelectin-1 deposited on cell surfaces

(2009) S. Tsuji et al.   GLYCOBIOLOGY

Influence of NFκB inhibitors on IL-1β-induced chemokine CXCL8 and -10 expression levels in intestinal epithelial cell lines: glucocorticoid ineffectiveness and paradoxical effect of PDTC

(2009) Yeruva Sunil et al.   INTERNATIONAL JOURNAL OF COLORECTAL DISEASE

Biomarker Discovery in Subclinical Mycobacterial Infections of Cattle

(2009) Meetu Seth et al.   PLoS One

ATP release by infected bovine monocytes increases the intracellular survival of Mycobacterium avium subsp. paratuberculosis

(2008) Seng-Ryong Woo et al.   COMPARATIVE IMMUNOLOGY MICROBIOLOGY AND INFECTIOUS DISEASES

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

(2008) J. C. Marioni et al.   GENOME RESEARCH

Contrasting roles of SPARC-related granuloma in bacterial containment and in the induction of anti–Salmonella typhimuriumimmunity

(2008) Gianluca Rotta et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

A review of prevalences of paratuberculosis in farmed animals in Europe

(2008) Søren Saxmose Nielsen et al.   PREVENTIVE VETERINARY MEDICINE

Ante mortem diagnosis of paratuberculosis: A review of accuracies of ELISA, interferon-γ assay and faecal culture techniques

(2008) S.S. Nielsen et al.   VETERINARY MICROBIOLOGY