RST1 and RIPR connect the cytosolic RNA exosome to the Ski complex in Arabidopsis

R-DeeP: Proteome-wide and Quantitative Identification of RNA-Dependent Proteins by Density Gradient Ultracentrifugation

(2019) Maiwen Caudron-Herger et al.   MOLECULAR CELL

A specialised SKI complex assists the cytoplasmic RNA exosome in the absence of direct association with ribosomes

(2019) Elodie Zhang et al.   EMBO JOURNAL

RST1 is a FREE1 suppressor that negatively regulates vacuolar trafficking in Arabidopsis

(2019) Qiong Zhao et al.   PLANT CELL

psRNATarget: a plant small RNA target analysis server (2017 release)

(2018) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

The nonstop decay and the RNA silencing systems operate cooperatively in plants

(2018) István Szádeczky-Kardoss et al.   NUCLEIC ACIDS RESEARCH

ArabidopsismRNA decay landscape arises from specialized RNA decay substrates, decapping-mediated feedback, and redundancy

(2018) Reed S. Sorenson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conservation of mRNA quality control factor Ski7 and its diversification through changes in alternative splicing and gene duplication

(2018) Alexandra N. Marshall et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure of the nuclear exosome captured on a maturing preribosome

(2018) Jan Michael Schuller et al.   SCIENCE

A Two-Headed Monster to Avert Disaster: HBS1/SKI7 Is Alternatively Spliced to Build Eukaryotic RNA Surveillance Complexes

(2018) Jacob O. Brunkard et al.   Frontiers in Plant Science

The PRIDE database and related tools and resources in 2019: improving support for quantification data

(2018) Yasset Perez-Riverol et al.   NUCLEIC ACIDS RESEARCH

Targeting RNA for processing or destruction by the eukaryotic RNA exosome and its cofactors

(2017) John C. Zinder et al.   GENES & DEVELOPMENT

An Mtr4/ZFC3H1 complex facilitates turnover of unstable nuclear RNAs to prevent their cytoplasmic transport and global translational repression

(2017) Koichi Ogami et al.   GENES & DEVELOPMENT

The Use of Grafting to Study Systemic Signaling in Plants

(2017) Hiroki Tsutsui et al.   PLANT AND CELL PHYSIOLOGY

Structural insights into the interaction of the nuclear exosome helicase Mtr4 with the preribosomal protein Nop53

(2017) Sebastian Falk et al.   RNA

RNA degradation by the plant RNA exosome involves both phosphorolytic and hydrolytic activities

(2017) Natalia Sikorska et al.   Nature Communications

Cytoplasmic RNA decay pathways - Enzymes and mechanisms

(2016) Anna Łabno et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Enhancer of Rudimentary Cooperates with Conserved RNA-Processing Factors to Promote Meiotic mRNA Decay and Facultative Heterochromatin Assembly

(2016) Tomoyasu Sugiyama et al.   MOLECULAR CELL

Identification of a Nuclear Exosome Decay Pathway for Processed Transcripts

(2016) Nicola Meola et al.   MOLECULAR CELL

The cryo-EM structure of a ribosome–Ski2-Ski3-Ski8 helicase complex

(2016) Christian Schmidt et al.   SCIENCE

Structure of the RBM7–ZCCHC8 core of the NEXT complex reveals connections to splicing factors

(2016) Sebastian Falk et al.   Nature Communications

Improved Placement of Multi-mapping Small RNAs

(2016) Nathan R. Johnson et al.   G3-Genes Genomes Genetics

The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis

(2016) Kian Hématy et al.   PLoS Genetics

Biogenesis of phased siRNAs on membrane-bound polysomes in Arabidopsis

(2016) Shengben Li et al.   eLife

In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs

(2015) Angel Emilio Martínez de Alba et al.   NUCLEIC ACIDS RESEARCH

SKI2 mediates degradation of RISC 5′-cleavage fragments and prevents secondary siRNA production from miRNA targets inArabidopsis

(2015) Anja Branscheid et al.   NUCLEIC ACIDS RESEARCH

Second-Site Mutagenesis of a Hypomorphicargonaute1Allele IdentifiesSUPERKILLER3as an Endogenous Suppressor of Transgene Posttranscriptional Gene Silencing

(2015) Agnès Yu et al.   PLANT PHYSIOLOGY

Suppression of endogenous gene silencing by bidirectional cytoplasmic RNA decay in Arabidopsis

(2015) X. Zhang et al.   SCIENCE

Saccharomyces cerevisiae Ski7 Is a GTP-Binding Protein Adopting the Characteristic Conformation of Active Translational GTPases

(2015) Eva Kowalinski et al.   STRUCTURE

lncRNA recruits RNAi and the exosome to dynamically regulate pho1 expression in response to phosphate levels in fission yeast

(2014) S. Shah et al.   GENES & DEVELOPMENT

The Exosome and Trans-Acting Small Interfering RNAs Regulate Cuticular Wax Biosynthesis during Arabidopsis Inflorescence Stem Development

(2014) Patricia Lam et al.   PLANT PHYSIOLOGY

Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex

(2014) E. D. Egan et al.   RNA

The RNA Helicases AtMTR4 and HEN2 Target Specific Subsets of Nuclear Transcripts for Degradation by the Nuclear Exosome in Arabidopsis thaliana

(2014) Heike Lange et al.   PLoS Genetics

Mtr4-like Protein Coordinates Nuclear RNA Processing for Heterochromatin Assembly and for Telomere Maintenance

(2013) Nathan N. Lee et al.   CELL

The Yeast Ski Complex: Crystal Structure and RNA Channeling to the Exosome Complex

(2013) Felix Halbach et al.   CELL

The Hbs1-Dom34 Protein Complex Functions in Non-stop mRNA Decay in Mammalian Cells

(2013) Syuhei Saito et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The human cap-binding complex is functionally connected to the nuclear RNA exosome

(2013) Peter Refsing Andersen et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Cytoplasmic and nuclear quality control and turnover of single-stranded RNA modulate post-transcriptional gene silencing in plants

(2013) Ana Beatriz Moreno et al.   NUCLEIC ACIDS RESEARCH

KIAA1797/FOCAD encodes a novel focal adhesion protein with tumour suppressor function in gliomas

(2012) Antje Brockschmidt et al.   BRAIN

Exo- and Endoribonucleolytic Activities of Yeast Cytoplasmic and Nuclear RNA Exosomes Are Dependent on the Noncatalytic Core and Central Channel

(2012) Elizabeth V. Wasmuth et al.   MOLECULAR CELL

Dom34:Hbs1 Plays a General Role in Quality-Control Systems by Dissociation of a Stalled Ribosome at the 3′ End of Aberrant mRNA

(2012) Tatsuhisa Tsuboi et al.   MOLECULAR CELL

Mutations in the Arabidopsis H3K4me2/3 Demethylase JMJ14 Suppress Posttranscriptional Gene Silencing by Decreasing Transgene Transcription

(2012) I. Le Masson et al.   PLANT CELL

Reconstitution of Plant Alkane Biosynthesis in Yeast Demonstrates That Arabidopsis ECERIFERUM1 and ECERIFERUM3 Are Core Components of a Very-Long-Chain Alkane Synthesis Complex

(2012) A. Bernard et al.   PLANT CELL

RDR1 and SGS3, Components of RNA-Mediated Gene Silencing, Are Required for the Regulation of Cuticular Wax Biosynthesis in Developing Inflorescence Stems of Arabidopsis

(2012) P. Lam et al.   PLANT PHYSIOLOGY

Hexanucleotide motifs mediate recruitment of the RNA elimination machinery to silent meiotic genes

(2012) A. Yamashita et al.   Open Biology

Context-Dependent Dual Role of SKI8 Homologs in mRNA Synthesis and Turnover

(2012) Eavan Dorcey et al.   PLoS Genetics

Interaction Profiling Identifies the Human Nuclear Exosome Targeting Complex

(2011) Michal Lubas et al.   MOLECULAR CELL

The eukaryotic RNA exosome: Same scaffold but variable catalytic subunits

(2011) Søren Lykke-Andersen et al.   RNA Biology

The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L

(2010) Rafal Tomecki et al.   EMBO JOURNAL

Dis3-like 1: a novel exoribonuclease associated with the human exosome

(2010) Raymond H J Staals et al.   EMBO JOURNAL

A ubiquitin-10 promoter-based vector set for fluorescent protein tagging facilitates temporal stability and native protein distribution in transient and stable expression studies

(2010) Christopher Grefen et al.   PLANT JOURNAL

Conserved RNaseII domain protein functions in cytoplasmic mRNA decay and suppresses Arabidopsis decapping mutant phenotypes

(2010) W. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Collection of Target Mimics for Comprehensive Analysis of MicroRNA Function in Arabidopsis thaliana

(2010) Marco Todesco et al.   PLoS Genetics

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Biochemical Evidence for Translational Repression by Arabidopsis MicroRNAs

(2009) E. Lanet et al.   PLANT CELL

Evolution of nonstop, no-go and nonsense-mediated mRNA decay and their termination factor-derived components

(2008) Gemma C Atkinson et al.   BMC EVOLUTIONARY BIOLOGY

A Yeast Exosome Cofactor, Mpp6, Functions in RNA Surveillance and in the Degradation of Noncoding RNA Transcripts

(2008) L. Milligan et al.   MOLECULAR AND CELLULAR BIOLOGY

Transcription Termination and RNA Degradation Contribute to Silencing of RNA Polymerase II Transcription within Heterochromatin

(2008) Lidia Vasiljeva et al.   MOLECULAR CELL