A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing
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Title
A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing
Authors
Keywords
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Journal
Nature Communications
Volume 10, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-08-14
DOI
10.1038/s41467-019-11591-1
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- (2016) Nicolas L Bray et al. NATURE BIOTECHNOLOGY
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- (2016) Iain C Macaulay et al. Nature Protocols
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- (2016) Elli Papaemmanuil et al. NEW ENGLAND JOURNAL OF MEDICINE
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