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Title
Genome-wide association mapping of date palm fruit traits
Authors
Keywords
-
Journal
Nature Communications
Volume 10, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2019-10-15
DOI
10.1038/s41467-019-12604-9
References
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- (2015) Dario Copetti et al. BMC GENOMICS
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- (2014) S. Anders et al. BIOINFORMATICS
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- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- A first genetic map of date palm (Phoenix dactylifera) reveals long-range genome structure conservation in the palms
- (2014) Lisa S Mathew et al. BMC GENOMICS
- Rfam 12.0: updates to the RNA families database
- (2014) Eric P. Nawrocki et al. NUCLEIC ACIDS RESEARCH
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- (2014) NUCLEIC ACIDS RESEARCH
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- (2013) Ibrahim S. Al-Mssallem et al. Nature Communications
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- (2011) Eman K Al-Dous et al. NATURE BIOTECHNOLOGY
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Considering Transposable Element Diversification in De Novo Annotation Approaches
- (2011) Timothée Flutre et al. PLoS One
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- (2009) Sascha Steinbiss et al. NUCLEIC ACIDS RESEARCH
- Splign: algorithms for computing spliced alignments with identification of paralogs
- (2008) Yuri Kapustin et al. Biology Direct
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