The Staphylococcus aureus Transcriptome during Cystic Fibrosis Lung Infection

Stress-induced inactivation of the Staphylococcus aureus purine biosynthesis repressor leads to hypervirulence

(2019) Mariya I. Goncheva et al.   Nature Communications

The purine biosynthesis regulator PurR moonlights as a virulence regulator in Staphylococcus aureus

(2019) William E. Sause et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial metabolic state more accurately predicts antibiotic lethality than growth rate

(2019) Allison J. Lopatkin et al.   Nature Microbiology

Pseudomonas aeruginosatranscriptome during human infection

(2018) Daniel M. Cornforth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Staphylococcus aureus Nasal Colonization: An Update on Mechanisms, Epidemiology, Risk Factors, and Subsequent Infections

(2018) Adèle Sakr et al.   Frontiers in Microbiology

Evolution of Bacterial “Frenemies”

(2017) Sophie E. Darch et al.   mBio

Amino Acid Catabolism in Staphylococcus aureus and the Function of Carbon Catabolite Repression

(2017) Cortney R. Halsey et al.   mBio

The Metallophore Staphylopine Enables Staphylococcus aureus To Compete with the Host for Zinc and Overcome Nutritional Immunity

(2017) Kyle P. Grim et al.   mBio

Staphylococcus aureus pathogenesis in diverse host environments

(2017) Divya Balasubramanian et al.   Pathogens and Disease

In vivo gene expression in a Staphylococcus aureus prosthetic joint infection characterized by RNA sequencing and metabolomics: a pilot study

(2016) Yijuan Xu et al.   BMC MICROBIOLOGY

Staphylococcal chromosomal cassettes mec (SCCmec): A mobile genetic element in methicillin-resistant Staphylococcus aureus

(2016) Junyan Liu et al.   MICROBIAL PATHOGENESIS

Comparative genome-scale modelling ofStaphylococcus aureusstrains identifies strain-specific metabolic capabilities linked to pathogenicity

(2016) Emanuele Bosi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide Annotation, Identification, and Global Transcriptomic Analysis of Regulatory or Small RNA Gene Expression in Staphylococcus aureus

(2016) Ronan K. Carroll et al.   mBio

The SaeRS Two‐Component System of Staphylococcus aureus

(2016) Qian Liu et al.   Genes

Coculture of Staphylococcus aureus with Pseudomonas aeruginosa Drives S. aureus towards Fermentative Metabolism and Reduced Viability in a Cystic Fibrosis Model

(2015) Laura M. Filkins et al.   JOURNAL OF BACTERIOLOGY

Essential genome ofPseudomonas aeruginosain cystic fibrosis sputum

(2015) Keith H. Turner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Heatmap3: an improved heatmap package with more powerful and convenient features

(2014) Shilin Zhao et al.   BMC BIOINFORMATICS

Staphylococcus aureus Hyaluronidase Is a CodY-Regulated Virulence Factor

(2014) Carolyn B. Ibberson et al.   INFECTION AND IMMUNITY

Adaptation of Pseudomonas aeruginosa in Cystic Fibrosis Airways Influences Virulence of Staphylococcus aureus In Vitro and Murine Models of Co-Infection

(2014) Rossella Baldan et al.   PLoS One

Differential regulation of staphylococcal virulence by the sensor kinase SaeS in response to neutrophil-derived stimuli

(2014) C. E. Flack et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In Vivo mRNA Profiling of Uropathogenic Escherichia coli from Diverse Phylogroups Reveals Common and Group-Specific Gene Expression Profiles

(2014) P. Bielecki et al.   mBio

Respiratory bacterial infections in cystic fibrosis

(2013) Oana Ciofu et al.   CURRENT OPINION IN PULMONARY MEDICINE

Staphylococcus aureus virulence factors in evasion from innate immune defenses in human and animal diseases

(2013) Alfonso Zecconi et al.   IMMUNOLOGY LETTERS

Sialic Acid Catabolism in Staphylococcus aureus

(2013) M. E. Olson et al.   JOURNAL OF BACTERIOLOGY

Global Gene Expression of Methicillin-resistant Staphylococcus aureus USA300 During Human and Mouse Infection

(2013) Shailesh V. Date et al.   JOURNAL OF INFECTIOUS DISEASES

A Genetic Resource for Rapid and Comprehensive Phenotype Screening of Nonessential Staphylococcus aureus Genes

(2013) P. D. Fey et al.   mBio

Virulence strategies of the dominant USA300 lineage of community-associated methicillin-resistantStaphylococcus aureus(CA-MRSA)

(2012) Lance R. Thurlow et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Staphylococcus aureus determinants for nasal colonization

(2012) Christopher Weidenmaier et al.   TRENDS IN MICROBIOLOGY

RNA-Seq-Based Monitoring of Infection-Linked Changes in Vibrio cholerae Gene Expression

(2011) Anjali Mandlik et al.   Cell Host & Microbe

NsaRS is a cell-envelope-stress-sensing two-component system of Staphylococcus aureus

(2011) S. L. Kolar et al.   MICROBIOLOGY-SGM

Metal ion acquisition in Staphylococcus aureus: overcoming nutritional immunity

(2011) James E. Cassat et al.   Seminars in Immunopathology

Identification of Genes Involved in Polysaccharide-Independent Staphylococcus aureus Biofilm Formation

(2010) Blaise R. Boles et al.   PLoS One

CodY in Staphylococcus aureus: a Regulatory Link between Metabolism and Virulence Gene Expression

(2009) K. Pohl et al.   JOURNAL OF BACTERIOLOGY

At the Crossroads of Bacterial Metabolism and Virulence Factor Synthesis in Staphylococci

(2009) G. A. Somerville et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Molecular Pathogenesis of Staphylococcus aureus Infection

(2009) George Y Liu   PEDIATRIC RESEARCH