Novel Polyomaviruses in Mammals from Multiple Orders and Reassessment of Polyomavirus Evolution and Taxonomy

Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018)

(2019) Stuart G. Siddell et al.   ARCHIVES OF VIROLOGY

Bayesian Inference of Evolutionary Histories under Time-Dependent Substitution Rates

(2019) Jade Vincent Membrebe et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fish polyomaviruses belong to two distinct evolutionary lineages

(2018) Koenraad Van Doorslaer et al.   JOURNAL OF GENERAL VIROLOGY

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Idiopathic pulmonary fibrosis in West Highland white terriers: An update

(2018) Cécile Clercx et al.   VETERINARY JOURNAL

Investigating Difficult Nodes in the Placental Mammal Tree with Expanded Taxon Sampling and Thousands of Ultraconserved Elements

(2017) Jacob A. Esselstyn et al.   Genome Biology and Evolution

Biology, evolution, and medical importance of polyomaviruses: An update

(2017) Ugo Moens et al.   INFECTION GENETICS AND EVOLUTION

Novel polyomaviruses in shrews (Soricidae) with close similarity to human polyomavirus 12

(2017) Alma Gedvilaite et al.   JOURNAL OF GENERAL VIROLOGY

Large T antigen variants of human polyomaviruses 9 and 12 and seroreactivity against their N terminus

(2017) Sarah-Verena Korup-Schulz et al.   JOURNAL OF GENERAL VIROLOGY

Discovery of African bat polyomaviruses and infrequent recombination in the large T antigen in the Polyomaviridae

(2017) Michael Carr et al.   JOURNAL OF GENERAL VIROLOGY

Identification of the same polyomavirus species in different African horseshoe bat species is indicative of short-range host-switching events

(2017) Michael Carr et al.   JOURNAL OF GENERAL VIROLOGY

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

(2017) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

SMS: Smart Model Selection in PhyML

(2017) Vincent Lefort et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families

(2017) Jemma L. Geoghegan et al.   PLoS Pathogens

A taxonomy update for the family Polyomaviridae

(2016) Sébastien Calvignac-Spencer et al.   ARCHIVES OF VIROLOGY

Assessing Host-Virus Codivergence for Close Relatives of Merkel Cell Polyomavirus Infecting African Great Apes

(2016) Nadège F. Madinda et al.   JOURNAL OF VIROLOGY

Time-Dependent Rate Phenomenon in Viruses

(2016) Pakorn Aiewsakun et al.   JOURNAL OF VIROLOGY

The Ancient Evolutionary History of Polyomaviruses

(2016) Christopher B. Buck et al.   PLoS Pathogens

Adenovirus in Rural Côte D`Ivoire: High Diversity and Cross-Species Detection

(2015) Maude Pauly et al.   EcoHealth

Discovery of a polyomavirus in European badgers (Meles meles) and the evolution of host range in the family Polyomaviridae

(2015) Sarah C. Hill et al.   JOURNAL OF GENERAL VIROLOGY

Characterization of T Antigens, Including Middle T and Alternative T, Expressed by the Human Polyomavirus Associated with Trichodysplasia Spinulosa

(2015) Els van der Meijden et al.   JOURNAL OF VIROLOGY

Multiple Cross-Species Transmission Events of Human Adenoviruses (HAdV) during Hominine Evolution

(2015) Eileen Hoppe et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Comprehensive Analysis of Replicating Merkel Cell Polyomavirus Genomes Delineates the Viral Transcription Program and Suggests a Role for mcv-miR-M1 in Episomal Persistence

(2015) Juliane Marie Theiss et al.   PLoS Pathogens

Identification of Two Novel Members of the Tentative Genus Wukipolyomavirus in Wild Rodents

(2015) Juozas Nainys et al.   PLoS One

Identification of a Novel Human Polyomavirus in Organs of the Gastrointestinal Tract

(2013) Sarah Korup et al.   PLoS One

Identification of a Novel Cetacean Polyomavirus from a Common Dolphin (Delphinus delphis) with Tracheobronchitis

(2013) Simon J. Anthony et al.   PLoS One

Identification of an overprinting gene in Merkel cell polyomavirus provides evolutionary insight into the birth of viral genes

(2013) J. J. Carter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel Polyomaviruses of Nonhuman Primates: Genetic and Serological Predictors for the Existence of Multiple Unknown Polyomaviruses within the Human Population

(2013) Nelly Scuda et al.   PLoS Pathogens

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Defective DNA repair and cell cycle arrest in cells expressing Merkel cell polyomavirus T antigen

(2012) Stephanie K. Demetriou et al.   INTERNATIONAL JOURNAL OF CANCER

Discovery of diverse polyomaviruses in bats and the evolutionary history of the Polyomaviridae

(2012) Y. Tao et al.   JOURNAL OF GENERAL VIROLOGY

Complete Genome Sequence of a Polyomavirus Isolated from Horses

(2012) Randall W. Renshaw et al.   JOURNAL OF VIROLOGY

Discovery of STL polyomavirus, a polyomavirus of ancestral recombinant origin that encodes a unique T antigen by alternative splicing

(2012) Efrem S. Lim et al.   VIROLOGY

Molecular Identification of Small Mammal Species Using Novel Cytochrome b Gene-Derived Degenerated Primers

(2011) Mathias Schlegel et al.   BIOCHEMICAL GENETICS

A Novel Human Polyomavirus Closely Related to the African Green Monkey-Derived Lymphotropic Polyomavirus

(2011) N. Scuda et al.   JOURNAL OF VIROLOGY

Quantifying the Phylodynamic Forces Driving Papillomavirus Evolution

(2011) M. Gottschling et al.   MOLECULAR BIOLOGY AND EVOLUTION

Purifying Selection Can Obscure the Ancient Age of Viral Lineages

(2011) Joel O. Wertheim et al.   MOLECULAR BIOLOGY AND EVOLUTION

Survey of Branch Support Methods Demonstrates Accuracy, Power, and Robustness of Fast Likelihood-based Approximation Schemes

(2011) Maria Anisimova et al.   SYSTEMATIC BIOLOGY

Jane: a new tool for the cophylogeny reconstruction problem

(2010) Chris Conow et al.   Algorithms for Molecular Biology

Merkel Cell Polyomavirus and Two Previously Unknown Polyomaviruses Are Chronically Shed from Human Skin

(2010) Rachel M. Schowalter et al.   Cell Host & Microbe

RNA processing in the polyoma virus life cycle

(2010) Yingqun Huang   Frontiers in Bioscience-Landmark

Tuberculosis in Alpacas (Lama pacos) Caused by Mycobacterium bovis

(2010) I. Garcia-Bocanegra et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Detection and characterization of a novel polyomavirus in wild rodents

(2010) Y. Orba et al.   JOURNAL OF GENERAL VIROLOGY

African Great Apes Are Naturally Infected with Polyomaviruses Closely Related to Merkel Cell Polyomavirus

(2010) F. H. Leendertz et al.   JOURNAL OF VIROLOGY

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Detection and characterization of two chimpanzee polyomavirus genotypes from different subspecies

(2010) Ilona Deuzing et al.   Virology Journal

A truncated T antigen expressed from an alternatively spliced BK virus early mRNA

(2009) J. R. Abend et al.   JOURNAL OF GENERAL VIROLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Human Splicing Finder: an online bioinformatics tool to predict splicing signals

(2009) François-Olivier Desmet et al.   NUCLEIC ACIDS RESEARCH

Novel Mammalian Herpesviruses and Lineages within the Gammaherpesvirinae: Cospeciation and Interspecies Transfer

(2008) B. Ehlers et al.   JOURNAL OF VIROLOGY

T antigen mutations are a human tumor-specific signature for Merkel cell polyomavirus

(2008) M. Shuda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA