Evaluation of DNA extraction kits and phylogenetic diversity of the porcine gastrointestinal tract based on Illumina sequencing of two hypervariable regions

The pig gut microbial diversity: Understanding the pig gut microbial ecology through the next generation high throughput sequencing

(2015) Hyeun Bum Kim et al.   VETERINARY MICROBIOLOGY

The Dynamic Distribution of Porcine Microbiota across Different Ages and Gastrointestinal Tract Segments

(2015) Wenjing Zhao et al.   PLoS One

Processing faecal samples: a step forward for standards in microbial community analysis

(2014) Alba Santiago et al.   BMC MICROBIOLOGY

Soybean Plants Modify Metal Oxide Nanoparticle Effects on Soil Bacterial Communities

(2014) Yuan Ge et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Temporal changes and the effect of subtherapeutic concentrations of antibiotics in the gut microbiota of swine

(2014) Devin B. Holman et al.   FEMS MICROBIOLOGY ECOLOGY

Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations

(2014) Torey Looft et al.   ISME Journal

Technical note: A comparison of DNA collection methods in cattle and yaks1

(2014) M. T. Neary et al.   JOURNAL OF ANIMAL SCIENCE

Comparison of seven methods for extraction of bacterial DNA from fecal and cecal samples of mice

(2014) Janina Ferrand et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Pyrosequencing-based analysis of fecal microbial communities in three purebred pig lines

(2014) Edward Alain B. Pajarillo et al.   JOURNAL OF MICROBIOLOGY

Early Changes in Microbial Colonization Selectively Modulate Intestinal Enzymes, but Not Inducible Heat Shock Proteins in Young Adult Swine

(2014) Marie-Edith Arnal et al.   PLoS One

Comparison of DNA extraction kits and modification of DNA elution procedure for the quantitation of subdominant bacteria from piggery effluents with real-time PCR

(2014) Jérémy Desneux et al.   MicrobiologyOpen

DNA extraction protocols cause differences in 16S rRNA amplicon sequencing efficiency but not in community profile composition or structure

(2014) Benjamin E. R. Rubin et al.   MicrobiologyOpen

Impact of dietary protein on microbiota composition and activity in the gastrointestinal tract of piglets in relation to gut health: a review

(2013) V. T. S. Rist et al.   Animal

Changes in the gut microbiota of cloned and non-cloned control pigs during development of obesity: gut microbiota during development of obesity in cloned pigs

(2013) Rebecca Pedersen et al.   BMC MICROBIOLOGY

Assessing the Human Gut Microbiota in Metabolic Diseases

(2013) F. Karlsson et al.   DIABETES

Comparing the anterior nare bacterial community of two discrete human populations using Illumina amplicon sequencing

(2013) Amélia Camarinha-Silva et al.   ENVIRONMENTAL MICROBIOLOGY

A comparison of the efficiency of five different commercial DNA extraction kits for extraction of DNA from faecal samples

(2013) Shantelle Claassen et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Use of pigs as a potential model for research into dietary modulation of the human gut microbiota

(2013) Sonja N. Heinritz et al.   NUTRITION RESEARCH REVIEWS

Characterisation of Gut Microbiota in Ossabaw and Göttingen Minipigs as Models of Obesity and Metabolic Syndrome

(2013) Rebecca Pedersen et al.   PLoS One

Effect of DNA Extraction Methods and Sampling Techniques on the Apparent Structure of Cow and Sheep Rumen Microbial Communities

(2013) Gemma Henderson et al.   PLoS One

The Effect of Dietary Supplementation with Spent Cider Yeast on the Swine Distal Gut Microbiome

(2013) Aditya Upadrasta et al.   PLoS One

Biases during DNA extraction of activated sludge samples revealed by high throughput sequencing

(2012) Feng Guo et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Does Participation in Clinical Trials Influence the Implementation of New Techniques? A Look at Changing Techniques in Breast Radiotherapy in the UK

(2012) K. Venables et al.   CLINICAL ONCOLOGY

Assessment of the Probiotic Potential of a Dairy Product Fermented by Propionibacterium freudenreichii in Piglets

(2012) Fabien J. Cousin et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

A framework for human microbiome research

(2012)   NATURE

Effect of Lactobacillus salivarius Bacteriocin Abp118 on the Mouse and Pig Intestinal Microbiota

(2012) Eliette Riboulet-Bisson et al.   PLoS One

High-Throughput Sequencing of 16S rRNA Gene Amplicons: Effects of Extraction Procedure, Primer Length and Annealing Temperature

(2012) Martin J. Sergeant et al.   PLoS One

Comparative fecal metagenomics unveils unique functional capacity of the swine gut

(2011) Regina Lamendella et al.   BMC MICROBIOLOGY

The currently used commercial DNA-extraction methods give different results of clostridial and actinobacterial populations derived from human fecal samples

(2011) Johanna Maukonen et al.   FEMS MICROBIOLOGY ECOLOGY

In-depth Characterization via Complementing Culture-Independent Approaches of the Microbial Community in an Acidic Hot Spring of the Colombian Andes

(2011) Laura C. Bohorquez et al.   MICROBIAL ECOLOGY

Nonstarch Polysaccharides Modulate Bacterial Microbiota, Pathways for Butyrate Production, and Abundance of Pathogenic Escherichia coli in the Pig Gastrointestinal Tract

(2010) B. U. Metzler-Zebeli et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags

(2010) Gary D Wu et al.   BMC MICROBIOLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

(2010) Marcus J. Claesson et al.   NUCLEIC ACIDS RESEARCH

Comparison of DNA extraction kits for PCR-DGGE analysis of human intestinal microbial communities from fecal specimens

(2010) Merlin W Ariefdjohan et al.   Nutrition Journal

Microbial community profiling for human microbiome projects: Tools, techniques, and challenges

(2009) M. Hamady et al.   GENOME RESEARCH

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

(2008) Micah Hamady et al.   NATURE METHODS

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE