Unraveling the microbiome of a thermophilic biogas plant by metagenome and metatranscriptome analysis complemented by characterization of bacterial and archaeal isolates

Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants

(2016) Yvonne Stolze et al.   Biotechnology for Biofuels

Description of Proteiniphilum saccharofermentans sp. nov., Petrimonas mucosa sp. nov. and Fermentimonas caenicola gen. nov., sp. nov., isolated from mesophilic laboratory-scale biogas reactors, and emended description of the genus Proteiniphilum

(2016) Sarah Hahnke et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Isolation of acetic, propionic and butyric acid-forming bacteria from biogas plants

(2016) Katharina Gabriela Cibis et al.   JOURNAL OF BIOTECHNOLOGY

Genomic characterization of Defluviitoga tunisiensis L3, a key hydrolytic bacterium in a thermophilic biogas plant and its abundance as determined by metagenome fragment recruitment

(2016) Irena Maus et al.   JOURNAL OF BIOTECHNOLOGY

Community shifts in a well-operating agricultural biogas plant: how process variations are handled by the microbiome

(2015) Susanne Theuerl et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions

(2015) Yvonne Stolze et al.   Biotechnology for Biofuels

The Rebirth of Culture in Microbiology through the Example of Culturomics To Study Human Gut Microbiota

(2015) Jean-Christophe Lagier et al.   CLINICAL MICROBIOLOGY REVIEWS

Herbinix hemicellulosilytica gen. nov., sp. nov., a thermophilic cellulose-degrading bacterium isolated from a thermophilic biogas reactor

(2015) Daniela E. Koeck et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Analysis of microbial community composition in a lab-scale membrane distillation bioreactor

(2015) Q. Zhang et al.   JOURNAL OF APPLIED MICROBIOLOGY

Draft genome sequence of Herbinix hemicellulosilytica T3/55T, a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor

(2015) Daniela E. Koeck et al.   JOURNAL OF BIOTECHNOLOGY

Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plant

(2015) Irena Maus et al.   JOURNAL OF BIOTECHNOLOGY

First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking

(2015) Yuji Sekiguchi et al.   PeerJ

Characterization of microbial community structure during continuous anaerobic digestion of straw and cow manure

(2015) Li Sun et al.   Microbial Biotechnology

Mesophilic versus thermophilic anaerobic digestion of cattle manure: methane productivity and microbial ecology

(2015) Veronica Moset et al.   Microbial Biotechnology

Comparison of the microbial communities in solid-state anaerobic digestion (SS-AD) reactors operated at mesophilic and thermophilic temperatures

(2014) Yueh-Fen Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Isolation and differentiation of methanogenic Archaea from mesophilic corn-fed on-farm biogas plants with special emphasis on the genus Methanobacterium

(2014) R. Stantscheff et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Comparative analysis of the ability of Clostridium clariflavum strains and Clostridium thermocellumto utilize hemicellulose and unpretreated plant material

(2014) Javier A Izquierdo et al.   Biotechnology for Biofuels

Dual investigation of methanogenic processes by quantitative PCR and quantitative microscopic fingerprinting

(2014) Yong Sung Kim et al.   FEMS MICROBIOLOGY LETTERS

Clostridium bornimense sp. nov., isolated from a mesophilic, two-phase, laboratory-scale biogas reactor

(2014) S. Hahnke et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plant

(2014) Daniela E. Koeck et al.   JOURNAL OF BIOTECHNOLOGY

Microbial Succession during Thermophilic Digestion: The Potential of Methanosarcina sp

(2014) Paul Illmer et al.   PLoS One

Comparative genotyping of Clostridium thermocellum strains isolated from biogas plants: Genetic markers and characterization of cellulolytic potential

(2014) Daniela E. Koeck et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Thermophilic microbial cellulose decomposition and methanogenesis pathways recharacterized by metatranscriptomic and metagenomic analysis

(2014) Yu Xia et al.   Scientific Reports

Microbial community structure of a pilot-scale thermophilic anaerobic digester treating poultry litter

(2013) Ami M. Smith et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms

(2013) Felix G Eikmeyer et al.   Biotechnology for Biofuels

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation

(2013) Angelika Hanreich et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

First international comparative study of volatile fatty acids in aqueous samples by chromatographic techniques: Evaluating sources of error

(2013) F. Raposo et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Unexpected Stability of Bacteroidetes and Firmicutes Communities in Laboratory Biogas Reactors Fed with Different Defined Substrates

(2012) K. Kampmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Temperature increases from 55 to 75 °C in a two-phase biogas reactor result in fundamental alterations within the bacterial and archaeal community structure

(2012) Antje Rademacher et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Methanosarcina: The rediscovered methanogen for heavy duty biomethanation

(2012) Jo De Vrieze et al.   BIORESOURCE TECHNOLOGY

Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing

(2012) Martha Zakrzewski et al.   JOURNAL OF BIOTECHNOLOGY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The Metagenome of an Anaerobic Microbial Community Decomposing Poplar Wood Chips

(2012) Daniel van der Lelie et al.   PLoS One

FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes

(2011) Beifang Niu et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Recognition of Clostridium difficile PCR-ribotypes 001, 027 and 126/078 using an extended MALDI-TOF MS system

(2011) M. Reil et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing

(2011) Antje Rademacher et al.   FEMS MICROBIOLOGY ECOLOGY

Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species

(2011) O.-S. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid

(2011) Daniel Wibberg et al.   JOURNAL OF BIOTECHNOLOGY

Effects of different nitrogen sources on the biogas production – a lab-scale investigation

(2011) Andreas Otto Wagner et al.   MICROBIOLOGICAL RESEARCH

Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing

(2011) Sebastian Jaenicke et al.   PLoS One

Quantification of syntrophic acetate-oxidizing microbial communities in biogas processes

(2011) Maria Westerholm et al.   Environmental Microbiology Reports

Polyphasic Analyses of Methanogenic Archaeal Communities in Agricultural Biogas Plants

(2010) E. Nettmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Anaerobic Digestion of Renewable Biomass: Thermophilic Temperature Governs Methanogen Population Dynamics

(2010) N. Krakat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Determination of methanogenic Archaea abundance in a mesophilic biogas plant based on 16S rRNA gene sequence analysis

(2010) I. Bergmann et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Hydrolytic bacteria in mesophilic and thermophilic degradation of plant biomass

(2010) Vladimir V. Zverlov et al.   ENGINEERING IN LIFE SCIENCES

The microcosm of a biogas fermenter: Comparison of moderate hyperthermophilic (60°C) with thermophilic (55°C) conditions

(2010) Niclas Krakat et al.   ENGINEERING IN LIFE SCIENCES

Isolation, genetic and functional characterization of novel soil nirK-type denitrifiers

(2010) Silke Falk et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Two Major Archaeal Pseudomurein Endoisopeptidases: PeiW and PeiP

(2010) Ganesh Ram R. Visweswaran et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge

(2009) Delphine Rivière et al.   ISME Journal

Survival of bacterial pathogens during the thermophilic anaerobic digestion of biowaste: Laboratory experiments and in situ validation

(2008) Andreas Otto Wagner et al.   ANAEROBE

Diversity of the resident microbiota in a thermophilic municipal biogas plant

(2008) Agnes Weiss et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Archaea diversity within a commercial biogas plant utilizing herbal biomass determined by 16S rDNA andmcrA analysis

(2008) E. Nettmann et al.   JOURNAL OF APPLIED MICROBIOLOGY

The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology

(2008) Andreas Schlüter et al.   JOURNAL OF BIOTECHNOLOGY

Syntrophic Acetate-Oxidizing Microbes in Methanogenic Environments

(2008) Satoshi Hattori   MICROBES AND ENVIRONMENTS

Simultaneous Assessment of Soil Microbial Community Structure and Function through Analysis of the Meta-Transcriptome

(2008) Tim Urich et al.   PLoS One