Goals and hurdles for a successful implementation of genomic selection in breeding programme for selected annual and perennial crops

Breeding schemes for the implementation of genomic selection in wheat ( Triticum spp . )

(2016) Filippo M. Bassi et al.   PLANT SCIENCE

Accuracy of Predicted Genomic Breeding Values in Purebred and Crossbred Pigs

(2015) André M. Hidalgo et al.   G3-Genes Genomes Genetics

Genomic selection needs to be carefully assessed to meet specific requirements in livestock breeding programs

(2015) Elisabeth Jonas et al.   Frontiers in Genetics

Bridging the gap between marker-assisted and genomic selection of heading time and plant height in hybrid wheat

(2014) Y Zhao et al.   HEREDITY

Animal-breeding schemes using genomic information need breeding plans designed to maximise long-term genetic gains

(2014) M. Henryon et al.   Livestock Science

Genomic evaluation of cattle in a multi-breed context

(2014) Mogens Sandø Lund et al.   Livestock Science

Towards sequence-based genomic selection of cattle

(2014) Michel Georges   NATURE GENETICS

Genomics-based precision breeding approaches to improve drought tolerance in rice

(2013) B.P. Mallikarjuna Swamy et al.   BIOTECHNOLOGY ADVANCES

Genomic selection in sugar beet breeding populations

(2013) Tobias Würschum et al.   BMC GENETICS

Using Genomic Prediction to Characterize Environments and Optimize Prediction Accuracy in Applied Breeding Data

(2013) Nicolas Heslot et al.   CROP SCIENCE

Genomic Selection in Forage Breeding: Accuracy and Methods

(2013) Rosangela Maria Simeão Resende et al.   CROP SCIENCE

Development of genomics-based genotyping platforms and their applications in rice breeding

(2013) Haodong Chen et al.   CURRENT OPINION IN PLANT BIOLOGY

Rice breeding in the post-genomics era: from concept to practice

(2013) Zhi-Kang Li et al.   CURRENT OPINION IN PLANT BIOLOGY

The use of unbalanced historical data for genomic selection in an international wheat breeding program

(2013) Julie C. Dawson et al.   FIELD CROPS RESEARCH

Genomic Predictability of Interconnected Biparental Maize Populations

(2013) C. Riedelsheimer et al.   GENETICS

Genomic selection of seed weight based on low-density SCAR markers in soybean

(2013) Y.J. Shu et al.   GENETICS AND MOLECULAR RESEARCH

Genomic prediction in CIMMYT maize and wheat breeding programs

(2013) J Crossa et al.   HEREDITY

Traditional and Modern Plant Breeding Methods with Examples in Rice (Oryza sativa L.)

(2013) Flavio Breseghello et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Applications of biotechnology and genomics in potato improvement

(2013) Philippa J. Barrell et al.   PLANT BIOTECHNOLOGY JOURNAL

Genomic selection allowing for marker-by-environment interaction

(2013) Torben Schulz-Streeck et al.   PLANT BREEDING

Potential of genomic selection in rapeseed (Brassica napusL.) breeding

(2013) Tobias Würschum et al.   PLANT BREEDING

Prospects for genomic selection in forage plant species

(2013) Benjamin J. Hayes et al.   PLANT BREEDING

Optimizing the allocation of resources for genomic selection in one breeding cycle

(2013) Christian Riedelsheimer et al.   THEORETICAL AND APPLIED GENETICS

Experimental assessment of the accuracy of genomic selection in sugarcane

(2013) M. Gouy et al.   THEORETICAL AND APPLIED GENETICS

Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations

(2013) Jennifer Spindel et al.   THEORETICAL AND APPLIED GENETICS

Integrating environmental covariates and crop modeling into the genomic selection framework to predict genotype by environment interactions

(2013) Nicolas Heslot et al.   THEORETICAL AND APPLIED GENETICS

Genomic Prediction in Maize Breeding Populations with Genotyping-by-Sequencing

(2013) José Crossa et al.   G3-Genes Genomes Genetics

Will genomic selection be a practical method for plant breeding?

(2012) Akihiro Nakaya et al.   ANNALS OF BOTANY

Comparison of whole-genome prediction models for traits with contrasting genetic architecture in a diversity panel of maize inbred lines

(2012) Christian Riedelsheimer et al.   BMC GENOMICS

Potential and Optimization of Genomic Selection for Fusarium Head Blight Resistance in Six-Row Barley

(2012) A. J. Lorenz et al.   CROP SCIENCE

Genomic Prediction of Breeding Values when Modeling Genotype × Environment Interaction using Pedigree and Dense Molecular Markers

(2012) Juan Burgueño et al.   CROP SCIENCE

Genomic Selection using Multiple Populations

(2012) T. Schulz-Streeck et al.   CROP SCIENCE

Maximizing the Reliability of Genomic Selection by Optimizing the Calibration Set of Reference Individuals: Comparison of Methods in Two Diverse Groups of Maize Inbreds (Zea mays L.)

(2012) R. Rincent et al.   GENETICS

Prediction of genetic values of quantitative traits with epistatic effects in plant breeding populations

(2012) D Wang et al.   HEREDITY

A physical, genetic and functional sequence assembly of the barley genome

(2012)   NATURE

Analysis of the bread wheat genome using whole-genome shotgun sequencing

(2012) Rachel Brenchley et al.   NATURE

Marker-Assisted Selection for Disease Resistance in Wheat and Barley Breeding

(2012) Thomas Miedaner et al.   PHYTOPATHOLOGY

Choice of shrinkage parameter and prediction of genomic breeding values in elite maize breeding populations

(2012) Yusheng Zhao et al.   PLANT BREEDING

Genome-enabled prediction of genetic values using radial basis function neural networks

(2012) J. M. González-Camacho et al.   THEORETICAL AND APPLIED GENETICS

Genome-based prediction of test cross performance in two subsequent breeding cycles

(2012) Nina Hofheinz et al.   THEORETICAL AND APPLIED GENETICS

Impact of selective genotyping in the training population on accuracy and bias of genomic selection

(2012) Yusheng Zhao et al.   THEORETICAL AND APPLIED GENETICS

Genomewide predictions from maize single-cross data

(2012) Jon M. Massman et al.   THEORETICAL AND APPLIED GENETICS

Effectiveness of Genomic Prediction of Maize Hybrid Performance in Different Breeding Populations and Environments

(2012) Vanessa S. Windhausen et al.   G3-Genes Genomes Genetics

Evaluation of Genomic Prediction Methods for Fusarium Head Blight Resistance in Wheat

(2012) Jessica Rutkoski et al.   Plant Genome

Genomic Prediction of Genetic Values for Resistance to Wheat Rusts

(2012) Leonardo Ornella et al.   Plant Genome

Development of genome-wide SNP assays for rice

(2011) Susan R. McCouch et al.   BREEDING SCIENCE

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

Accuracy of Genomic Selection Prediction in Barley Breeding Programs: A Simulation Study Based On the Real Single Nucleotide Polymorphism Data of Barley Breeding Lines

(2011) Hiroyoshi Iwata et al.   CROP SCIENCE

Genomic Selection Accuracy for Grain Quality Traits in Biparental Wheat Populations

(2011) Elliot L. Heffner et al.   CROP SCIENCE

Genomic Selection in Plant Breeding: A Comparison of Models

(2011) Nicolas Heslot et al.   CROP SCIENCE

Methods of plant breeding in the genome era

(2011) SHIZHONG XU et al.   Genetics Research

High-throughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform

(2011) Michael J. Thomson et al.   MOLECULAR BREEDING

Evaluation of genome-wide selection efficiency in maize nested association mapping populations

(2011) Zhigang Guo et al.   THEORETICAL AND APPLIED GENETICS

Genome-based prediction of testcross values in maize

(2011) Theresa Albrecht et al.   THEORETICAL AND APPLIED GENETICS

Accuracy of genomic selection in European maize elite breeding populations

(2011) Yusheng Zhao et al.   THEORETICAL AND APPLIED GENETICS

Towards genomic selection in apple (Malus × domestica Borkh.) breeding programmes: Prospects, challenges and strategies

(2011) Satish Kumar et al.   Tree Genetics & Genomes

High-Resolution Genotyping of Wild Barley Introgression Lines and Fine-Mapping of the Threshability Locus thresh-1 Using the Illumina GoldenGate Assay

(2011) Inga Schmalenbach et al.   G3-Genes Genomes Genetics

Genomic Selection Accuracy using Multifamily Prediction Models in a Wheat Breeding Program

(2011) Elliot L. Heffner et al.   Plant Genome

Accuracy and Training Population Design for Genomic Selection on Quantitative Traits in Elite North American Oats

(2011) Franco G. Asoro et al.   Plant Genome

Genomic selection for durable stem rust resistance in wheat

(2010) Jessica E. Rutkoski et al.   EUPHYTICA

Prediction of Genetic Values of Quantitative Traits in Plant Breeding Using Pedigree and Molecular Markers

(2010) J. Crossa et al.   GENETICS

Prospects and challenges for genome-wide association and genomic selection in oilseed Brassica speciesThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”

(2010) W.A. Cowling et al.   GENOME

Analysis of yield and oil from a series of canola breeding trials. Part II. Exploring variety by environment interaction using factor analysisThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”.

(2010) B.R. Cullis et al.   GENOME

Factors Affecting Accuracy From Genomic Selection in Populations Derived From Multiple Inbred Lines: A Barley Case Study

(2009) S. Zhong et al.   GENETICS

Invited review: Genomic selection in dairy cattle: Progress and challenges

(2009) B.J. Hayes et al.   JOURNAL OF DAIRY SCIENCE

Under what circumstances can process-based simulation models link genotype to phenotype for complex traits? Case-study of fruit and grain quality traits

(2009) N. Bertin et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

(2009) et al.   SCIENCE

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

A model for incorporating novel alleles from the primary gene pool into elite crop breeding programs while reselecting major genes for domestication or adaptation

(2009) W. A. Cowling et al.   Crop & Pasture Science

Genomewide selection in oil palm: increasing selection gain per unit time and cost with small populations

(2008) C. K. Wong et al.   THEORETICAL AND APPLIED GENETICS

Precision animal breeding

(2007) A.P.F Flint et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES