SNMFSMMA: using symmetric nonnegative matrix factorization and Kronecker regularized least squares to predict potential small molecule-microRNA association

Systematical Identification of Breast Cancer-Related Circular RNA Modules for Deciphering circRNA Functions Based on the Non-Negative Matrix Factorization Algorithm

(2019) Shuyuan Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Prediction of small molecule-microRNA associations by sparse learning and heterogeneous graph inference

(2019) Jun Yin et al.   MOLECULAR PHARMACEUTICS

Ensemble of decision tree reveals potential miRNA-disease associations

(2019) Xing Chen et al.   PLoS Computational Biology

BNPMDA: Bipartite Network Projection for MiRNA–Disease Association prediction

(2018) Xing Chen et al.   BIOINFORMATICS

Targeting RNA in mammalian systems with small molecules

(2018) Anita Donlic et al.   Wiley Interdisciplinary Reviews-RNA

OUP accepted manuscript

(2018)   BRIEFINGS IN BIOINFORMATICS

MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction

(2018) Xing Chen et al.   PLoS Computational Biology

A Novel Computational Method for the Identification of Potential miRNA-Disease Association Based on Symmetric Non-negative Matrix Factorization and Kronecker Regularized Least Square

(2018) Yan Zhao et al.   Frontiers in Genetics

4-Acetyl-Antroquinonol B Suppresses SOD2-Enhanced Cancer Stem Cell-Like Phenotypes and Chemoresistance of Colorectal Cancer Cells by inducing hsa-miR-324 re-Expression

(2018) Oluwaseun Adebayo Bamodu et al.   Cancers

Prediction of Potential Small Molecule-Associated MicroRNAs Using Graphlet Interaction

(2018) Na-Na Guan et al.   Frontiers in Pharmacology

Curcumin sensitizes prostate cancer cells to radiation partly via epigenetic activation of miR-143 and miR-143 mediated autophagy inhibition

(2017) Jianbo Liu et al.   JOURNAL OF DRUG TARGETING

NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations

(2017) Xing Chen et al.   Database-The Journal of Biological Databases and Curation

LRSSLMDA: Laplacian Regularized Sparse Subspace Learning for MiRNA-Disease Association prediction

(2017) Xing Chen et al.   PLoS Computational Biology

Inforna 2.0: A Platform for the Sequence-Based Design of Small Molecules Targeting Structured RNAs

(2016) Matthew D. Disney et al.   ACS Chemical Biology

Small-molecule approaches toward the targeting of oncogenic miRNAs: roadmap for the discovery of RNA modulators

(2016) Audrey Di Giorgio et al.   Future Medicinal Chemistry

Transcriptional gene silencing of dopamine D3 receptor caused by let-7d mimics in immortalized renal proximal tubule cells of rats

(2016) Ye Zhang et al.   GENE

Non-coding RNAs as drug targets

(2016) Masayuki Matsui et al.   NATURE REVIEWS DRUG DISCOVERY

MicroRNA-874 inhibits growth, induces apoptosis and reverses chemoresistance in colorectal cancer by targeting X-linked inhibitor of apoptosis protein

(2016) JINFENG HAN et al.   ONCOLOGY REPORTS

Identifying novel associations between small molecules and miRNAs based on integrated molecular networks

(2015) Yingli Lv et al.   BIOINFORMATICS

Tumor tissue microRNA expression in association with triple-negative breast cancer outcomes

(2015) Yan Liu et al.   BREAST CANCER RESEARCH AND TREATMENT

Thinking big with small molecules

(2015) Karen Mruk et al.   JOURNAL OF CELL BIOLOGY

The Clinical Relevance of the miR-197/CKS1B/STAT3-mediated PD-L1 Network in Chemoresistant Non-small-cell Lung Cancer

(2015) Yu Fujita et al.   MOLECULAR THERAPY

Methylation-mediated repression of potential tumor suppressor miR-203a and miR-203b contributes to esophageal squamous cell carcinoma development

(2015) Yibing Liu et al.   TUMOR BIOLOGY

A let-7b binding site SNP in the 3′-UTR of the Bcl-xL gene enhances resistance to 5-fluorouracil and doxorubicin in breast cancer cells

(2015) TING WANG et al.   Oncology Letters

Toward more realistic drug-target interaction predictions

(2014) T. Pahikkala et al.   BRIEFINGS IN BIOINFORMATICS

Extracellular Disposal of Tumor-Suppressor miRs-145 and -34a via Microvesicles and 5-FU Resistance of Human Colon Cancer Cells

(2014) Yukihiro Akao et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Targeting the Production of Oncogenic MicroRNAs with Multimodal Synthetic Small Molecules

(2013) Duc Duy Vo et al.   ACS Chemical Biology

Prediction of drug target groups based on chemical–chemical similarities and chemical–chemical/protein connections

(2013) Lei Chen et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Constructing and characterizing a bioactive small molecule and microRNA association network for Alzheimer's disease

(2013) F. Meng et al.   Journal of the Royal Society Interface

SM2miR: a database of the experimentally validated small molecules' effects on microRNA expression

(2012) X. Liu et al.   BIOINFORMATICS

Drug target prediction using adverse event report systems: a pharmacogenomic approach

(2012) M. Takarabe et al.   BIOINFORMATICS

Prediction of Disease-Related Interactions between MicroRNAs and Environmental Factors Based on a Semi-Supervised Classifier

(2012) Xing Chen et al.   PLoS One

Identification of links between small molecules and miRNAs in human cancers based on transcriptional responses

(2012) Wei Jiang et al.   Scientific Reports

Symmetric Nonnegative Matrix Factorization: Algorithms and Applications to Probabilistic Clustering

(2011) Zhaoshui He et al.   IEEE TRANSACTIONS ON NEURAL NETWORKS

A novel method to quantify gene set functional association based on gene ontology

(2011) S. Lv et al.   Journal of the Royal Society Interface

PREDICT: a method for inferring novel drug indications with application to personalized medicine

(2011) A. Gottlieb et al.   Molecular Systems Biology

DrugBank 3.0: a comprehensive resource for 'Omics' research on drugs

(2010) C. Knox et al.   NUCLEIC ACIDS RESEARCH

MicroRNAs and their implications in toxicological research

(2010) Carolina Lema et al.   TOXICOLOGY LETTERS

PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes

(2010) Andreas Ruepp et al.   GENOME BIOLOGY

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Differential expression profiling of microRNAs and their potential involvement in renal cell carcinoma pathogenesis

(2009) Tsz-fung F. Chow et al.   CLINICAL BIOCHEMISTRY

MicroRNA-143 reduces viability and increases sensitivity to 5-fluorouracil in HCT116 human colorectal cancer cells

(2009) Pedro M. Borralho et al.   FEBS Journal

PubChem: a public information system for analyzing bioactivities of small molecules

(2009) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Small-Molecule Inhibitors of MicroRNA miR-21 Function

(2008) Kiranmai Gumireddy et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

The noncoding RNA, miR-126, suppresses the growth of neoplastic cells by targeting phosphatidylinositol 3-kinase signaling and is frequently lost in colon cancers

(2008) Chunguang Guo et al.   GENES CHROMOSOMES & CANCER

miR2Disease: a manually curated database for microRNA deregulation in human disease

(2008) Q. Jiang et al.   NUCLEIC ACIDS RESEARCH

An Analysis of Human MicroRNA and Disease Associations

(2008) Ming Lu et al.   PLoS One