Repertoire-wide phylogenetic models of B cell molecular evolution reveal evolutionary signatures of aging and vaccination
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Title
Repertoire-wide phylogenetic models of B cell molecular evolution reveal evolutionary signatures of aging and vaccination
Authors
Keywords
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Journal
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Volume 116, Issue 45, Pages 22664-22672
Publisher
Proceedings of the National Academy of Sciences
Online
2019-10-22
DOI
10.1073/pnas.1906020116
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Note: Only part of the references are listed.- Signatures of selection in the human antibody repertoire: Selective sweeps, competing subclones, and neutral drift
- (2019) Felix Horns et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Influenza Virus Vaccination Elicits Poorly Adapted B Cell Responses in Elderly Individuals
- (2019) Carole Henry et al. Cell Host & Microbe
- Survival analysis of DNA mutation motifs with penalized proportional hazards
- (2019) Jean Feng et al. Annals of Applied Statistics
- Activation Dynamics and Immunoglobulin Evolution of Pre-existing and Newly Generated Human Memory B cell Responses to Influenza Hemagglutinin
- (2019) Sarah F. Andrews et al. IMMUNITY
- Fierce selection and interference in B-cell repertoire response to chronic HIV-1
- (2019) Armita Nourmohammad et al. MOLECULAR BIOLOGY AND EVOLUTION
- Using Genotype Abundance to Improve Phylogenetic Inference
- (2018) William S DeWitt et al. MOLECULAR BIOLOGY AND EVOLUTION
- Selection and Neutral Mutations Drive Pervasive Mutability Losses in Long-Lived Anti-HIV B-Cell Lineages
- (2018) Marcos C Vieira et al. MOLECULAR BIOLOGY AND EVOLUTION
- Biological sex affects vaccine efficacy and protection against influenza in mice
- (2018) Ashley L. Fink et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Phylogenetic Codon Substitution Model for Antibody Lineages
- (2017) Kenneth B. Hoehn et al. GENETICS
- Hierarchical Clustering Can Identify B Cell Clones with High Confidence in Ig Repertoire Sequencing Data
- (2017) Namita T. Gupta et al. JOURNAL OF IMMUNOLOGY
- A Phylogenetic Codon Substitution Model for Antibody Lineages
- (2017) Kenneth B. Hoehn et al. GENETICS
- The Diversity and Molecular Evolution of B-Cell Receptors during Infection
- (2016) Kenneth B. Hoehn et al. MOLECULAR BIOLOGY AND EVOLUTION
- Effects of Darwinian Selection and Mutability on Rate of Broadly Neutralizing Antibody Evolution during HIV-1 Infection
- (2016) Zizhang Sheng et al. PLoS Computational Biology
- Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data: Table 1.
- (2015) Namita T. Gupta et al. BIOINFORMATICS
- The ageing human B cell repertoire: a failure of selection?
- (2015) D. K. Dunn-Walters CLINICAL AND EXPERIMENTAL IMMUNOLOGY
- Dynamics of immunoglobulin sequence diversity in HIV-1 infected individuals
- (2015) Kenneth B. Hoehn et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Quantifying evolutionary constraints on B-cell affinity maturation
- (2015) Connor O. McCoy et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The mutation patterns in B-cell immunoglobulin receptors reflect the influence of selection acting at multiple time-scales
- (2015) Gur Yaari et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Bioinformatic and Statistical Analysis of Adaptive Immune Repertoires
- (2015) Victor Greiff et al. TRENDS IN IMMUNOLOGY
- A bioinformatic framework for immune repertoire diversity profiling enables detection of immunological status
- (2015) Victor Greiff et al. Genome Medicine
- Practical guidelines for B-cell receptor repertoire sequencing analysis
- (2015) Gur Yaari et al. Genome Medicine
- Human Responses to Influenza Vaccination Show Seroconversion Signatures and Convergent Antibody Rearrangements
- (2014) Katherine J.L. Jackson et al. Cell Host & Microbe
- High-resolution antibody dynamics of vaccine-induced immune responses
- (2014) Uri Laserson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes
- (2014) J. N. H. Stern et al. Science Translational Medicine
- Network properties derived from deep sequencing of human B-cell receptor repertoires delineate B-cell populations
- (2013) Rachael J.M. Bashford-Rogers et al. GENOME RESEARCH
- Effects of Aging, Cytomegalovirus Infection, and EBV Infection on Human B Cell Repertoires
- (2013) C. Wang et al. JOURNAL OF IMMUNOLOGY
- Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus
- (2013) Hua-Xin Liao et al. NATURE
- Genetic measurement of memory B-cell recall using antibody repertoire sequencing
- (2013) C. Vollmers et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Lineage Structure of the Human Antibody Repertoire in Response to Influenza Vaccination
- (2013) N. Jiang et al. Science Translational Medicine
- Models of Somatic Hypermutation Targeting and Substitution Based on Synonymous Mutations from High-Throughput Immunoglobulin Sequencing Data
- (2013) Gur Yaari et al. Frontiers in Immunology
- Quantifying selection in high-throughput Immunoglobulin sequencing data sets
- (2012) Gur Yaari et al. NUCLEIC ACIDS RESEARCH
- Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt
- (2009) Steffen Durinck et al. Nature Protocols
- High-Throughput Sequencing of the Zebrafish Antibody Repertoire
- (2009) J. A. Weinstein et al. SCIENCE
- Measurement and Clinical Monitoring of Human Lymphocyte Clonality by Massively Parallel V-D-J Pyrosequencing
- (2009) S. D. Boyd et al. Science Translational Medicine
- The aging of the immune system
- (2009) Daniela Weiskopf et al. TRANSPLANT INTERNATIONAL
- The Biochemistry of Somatic Hypermutation
- (2008) Jonathan U. Peled et al. Annual Review of Immunology
- Improved methods for detecting selection by mutation analysis of Ig V region sequences
- (2008) Uri Hershberg et al. INTERNATIONAL IMMUNOLOGY
- IgTree©: Creating Immunoglobulin variable region gene lineage trees
- (2008) Michal Barak et al. JOURNAL OF IMMUNOLOGICAL METHODS
- Rapid cloning of high-affinity human monoclonal antibodies against influenza virus
- (2008) Jens Wrammert et al. NATURE
- The Population Genetics of dN/dS
- (2008) Sergey Kryazhimskiy et al. PLoS Genetics
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