Cassava yield traits predicted by genomic selection methods

Relevance of genetic relationship in GWAS and genomic prediction

(2017) Helcio Duarte Pereira et al.   JOURNAL OF APPLIED GENETICS

Prospects for Genomic Selection in Cassava Breeding

(2017) Marnin D. Wolfe et al.   Plant Genome

Genotype Imputation with Millions of Reference Samples

(2016) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Inbreeding depression in cassava for productive traits

(2016) Juan Paulo Xavier de Freitas et al.   EUPHYTICA

Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity

(2016) Jessen V Bredeson et al.   NATURE BIOTECHNOLOGY

Bandwagons I, too, have known

(2016) Rex Bernardo   THEORETICAL AND APPLIED GENETICS

Marker-Based Estimates Reveal Significant Non-additive Effects in Clonally Propagated Cassava (Manihot esculenta): Implications for the Prediction of Total Genetic Value and the Selection of Varieties

(2016) M. D. Wolfe et al.   G3-Genes Genomes Genetics

Genome-Wide Association and Prediction Reveals Genetic Architecture of Cassava Mosaic Disease Resistance and Prospects for Rapid Genetic Improvement

(2016) Marnin D. Wolfe et al.   Plant Genome

Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer

(2016) Giovanny Covarrubias-Pazaran   PLoS One

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Conventional breeding, marker-assisted selection, genomic selection and inbreeding in clonally propagated crops: a case study for cassava

(2015) Hernán Ceballos et al.   THEORETICAL AND APPLIED GENETICS

The Effects of Restriction-Enzyme Choice on Properties of Genotyping-by-Sequencing Libraries: A Study in Cassava ()

(2014) Martha T. Hamblin et al.   CROP SCIENCE

Diallel analysis of early storage root yield and disease resistance traits in cassava (Manihot esculenta Crantz)

(2014) R. Tumuhimbise et al.   FIELD CROPS RESEARCH

Genome-Wide Regression and Prediction with the BGLR Statistical Package

(2014) P. Perez et al.   GENETICS

Development of a cassava core collection based on single nucleotide polymorphism markers

(2014) E.J. Oliveira et al.   GENETICS AND MOLECULAR RESEARCH

TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline

(2014) Jeffrey C. Glaubitz et al.   PLoS One

Training set optimization under population structure in genomic selection

(2014) Julio Isidro et al.   THEORETICAL AND APPLIED GENETICS

Relatedness and Genotype × Environment Interaction Affect Prediction Accuracies in Genomic Selection: A Study in Cassava

(2013) Delphine Ly et al.   CROP SCIENCE

Genomic Selection in Forage Breeding: Accuracy and Methods

(2013) Rosangela Maria Simeão Resende et al.   CROP SCIENCE

Combining ability of cassava genotypes for cassava mosaic disease and cassava bacterial blight, yield and its related components in two ecological zones in Ghana

(2013) Elizabeth Yaa Parkes et al.   EUPHYTICA

Genomic prediction in CIMMYT maize and wheat breeding programs

(2013) J Crossa et al.   HEREDITY

Genome-wide selection in cassava

(2012) Eder Jorge de Oliveira et al.   EUPHYTICA

The Effect of Linkage Disequilibrium and Family Relationships on the Reliability of Genomic Prediction

(2012) Y. C. J. Wientjes et al.   GENETICS

Genomic Selection in Wheat Breeding using Genotyping-by-Sequencing

(2012) Jesse Poland et al.   Plant Genome

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Genomic Selection in Plant Breeding: A Comparison of Models

(2011) Nicolas Heslot et al.   CROP SCIENCE

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

Diallel analysis of cassava brown streak disease, yield and yield related characteristics in Mozambique

(2010) A. M. Zacarias et al.   EUPHYTICA

Prediction of Genetic Values of Quantitative Traits in Plant Breeding Using Pedigree and Molecular Markers

(2010) J. Crossa et al.   GENETICS

Improved Lasso for genomic selection

(2010) ANDRÉS LEGARRA et al.   Genetics Research

Genomic selection in forest tree breeding

(2010) Dario Grattapaglia et al.   Tree Genetics & Genomes

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Reproducing Kernel Hilbert Spaces Regression Methods for Genomic Assisted Prediction of Quantitative Traits

(2008) D. Gianola et al.   GENETICS

Linkage disequilibrium, genetic association mapping and gene localization in crop plants

(2008) Karim Sorkheh et al.   GENETICS AND MOLECULAR BIOLOGY

The Bayesian Lasso

(2008) Trevor Park et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Linkage disequilibrium — understanding the evolutionary past and mapping the medical future

(2008) Montgomery Slatkin   NATURE REVIEWS GENETICS