Genomic comparison of diverse Salmonella serovars isolated from swine

Antimicrobial Resistance Genes, Cassettes, and Plasmids Present in Salmonella enterica Associated With United States Food Animals

(2019) Elizabeth A. McMillan et al.   Frontiers in Microbiology

Essentiality, conservation, evolutionary pressure and codon bias in bacterial genomes

(2018) Maddalena Dilucca et al.   GENE

Antibiotic susceptibility and molecular characterization of Salmonella enterica serovar Paratyphi B isolated from vegetables and processing environment in Malaysia

(2018) Abatcha Mustapha Goni et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Phylogenetic and antimicrobial resistance gene analysis of Salmonella Typhimurium strains isolated in Brazil by whole genome sequencing

(2018) Fernanda Almeida et al.   PLoS One

Whole genome sequencing analysis of multiple Salmonella serovars provides insights into phylogenetic relatedness, antimicrobial resistance, and virulence markers across humans, food animals and agriculture environmental sources

(2018) Suchawan Pornsukarom et al.   BMC GENOMICS

Epidemiological, molecular characterization and antibiotic resistance of Salmonella enterica serovars isolated from chicken farms in Egypt

(2017) Hanem El-Sharkawy et al.   Gut Pathogens

Structural basis of host recognition and biofilm formation by Salmonella Saf pili

(2017) Longhui Zeng et al.   eLife

Comparative Sequence Analysis of Multidrug-Resistant IncA/C Plasmids from Salmonella enterica

(2017) Maria Hoffmann et al.   Frontiers in Microbiology

Comparative genomics of Australian and international isolates of Salmonella Typhimurium: correlation of core genome evolution with CRISPR and prophage profiles

(2017) Songzhe Fu et al.   Scientific Reports

Whole-Genome Sequencing for Detecting Antimicrobial Resistance in Nontyphoidal Salmonella

(2016) Patrick F. McDermott et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

Antimicrobial resistance and class 1 integron-associated gene cassettes in Salmonella enterica serovar Typhimurium isolated from pigs at slaughter and abattoir environment

(2016) Graciela Volz Lopes et al.   VETERINARY MICROBIOLOGY

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Bacteriophage-mediated spread of bacterial virulence genes

(2015) José R Penadés et al.   CURRENT OPINION IN MICROBIOLOGY

WGS accurately predicts antimicrobial resistance inEscherichia coli

(2015) Gregory H. Tyson et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

The Per Case and Total Annual Costs of Foodborne Illness in the United States

(2015) Travis Minor et al.   RISK ANALYSIS

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data

(2014) David Coil et al.   BIOINFORMATICS

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

CRISPR-Cas Systems: Prokaryotes Upgrade to Adaptive Immunity

(2014) Rodolphe Barrangou et al.   MOLECULAR CELL

Antimicrobial-resistant genes associated withSalmonellaspp. isolated from human, poultry, and seafood sources

(2014) Yemisi O. Adesiji et al.   Food Science & Nutrition

ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes

(2013) Sushim Kumar Gupta et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools

(2013) Veljo Kisand et al.   BMC GENOMICS

Plasmids and the spread of resistance

(2013) Alessandra Carattoli   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Annual Report of the Chief Medical Officer: infection and the rise of antimicrobial resistance

(2013) Sally C Davies et al.   LANCET

Antimicrobial Resistance Genes in Multidrug-Resistant Salmonella enterica Isolated from Animals, Retail Meats, and Humans in the United States and Canada

(2013) LaShanda M. Glenn et al.   Microbial Drug Resistance

BacMet: antibacterial biocide and metal resistance genes database

(2013) Chandan Pal et al.   NUCLEIC ACIDS RESEARCH

LPS Structure and PhoQ Activity Are Important for Salmonella Typhimurium Virulence in the Gallleria mellonella Infection Model

(2013) Jennifer K. Bender et al.   PLoS One

Complete Nucleotide Sequences of Virulence-Resistance Plasmids Carried by Emerging Multidrug-Resistant Salmonella enterica Serovar Typhimurium Isolated from Cattle in Hokkaido, Japan

(2013) Yukino Tamamura et al.   PLoS One

Gene transfer agents: phage-like elements of genetic exchange

(2012) Andrew S. Lang et al.   NATURE REVIEWS MICROBIOLOGY

GogB Is an Anti-Inflammatory Effector that Limits Tissue Damage during Salmonella Infection through Interaction with Human FBXO22 and Skp1

(2012) Ana Victoria C. Pilar et al.   PLoS Pathogens

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interference

(2011) Natalia Beloglazova et al.   EMBO JOURNAL

Related Antimicrobial Resistance Genes Detected in Different Bacterial Species Co-isolated from Swine Fecal Samples

(2011) Jonathan G. Frye et al.   Foodborne Pathogens and Disease

Comparative Genomics of 28 Salmonella enterica Isolates: Evidence for CRISPR-Mediated Adaptive Sublineage Evolution

(2011) W. F. Fricke et al.   JOURNAL OF BACTERIOLOGY

The Salmonella enterica Pan-genome

(2011) Annika Jacobsen et al.   MICROBIAL ECOLOGY

Integrons

(2010) Guillaume Cambray et al.   Annual Review of Genetics

Aminoglycoside modifying enzymes

(2010) Maria S. Ramirez et al.   DRUG RESISTANCE UPDATES

The evolution and distribution of phage ST160 within Salmonella enterica serotype Typhimurium

(2010) M. PRICE-CARTER et al.   EPIDEMIOLOGY AND INFECTION

IncA/C plasmids mediate antimicrobial resistance linked to virulence genes in the Spanish clone of the emerging Salmonella enterica serotype 4,[5],12:i:−

(2010) Patricia García et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Characterization of drug resistant Salmonella enterica Serotype Typhimurium by Antibiograms, Plasmids, Integrons, Resistance Genes and PFGE

(2010) Kwai-Lin Thong   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Origins and Evolution of Antibiotic Resistance

(2010) J. Davies et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The Small, Slow and Specialized CRISPR and Anti-CRISPR of Escherichia and Salmonella

(2010) Marie Touchon et al.   PLoS One

INTEGRALL: a database and search engine for integrons, integrases and gene cassettes

(2009) A. Moura et al.   BIOINFORMATICS

Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi

(2009) Kathryn E Holt et al.   BMC GENOMICS

Comparative genomic analysis uncovers 3 novel loci encoding type six secretion systems differentially distributed in Salmonella serotypes

(2009) Carlos J Blondel et al.   BMC GENOMICS

Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources?

(2009) Frédéric Boyer et al.   BMC GENOMICS

The type VI secretion system: translocation of effectors and effector-domains

(2009) Stefan Pukatzki et al.   CURRENT OPINION IN MICROBIOLOGY

Supplement 2003–2007 (No. 47) to the White-Kauffmann-Le Minor scheme

(2009) Martine Guibourdenche et al.   RESEARCH IN MICROBIOLOGY

Genomic analysis of bacteriophage epsilon34 of Salmonella enterica serovar Anatum (15+)

(2008) Robert Villafane et al.   BMC MICROBIOLOGY

Animal reservoirs for extended spectrum β-lactamase producers

(2008) A. Carattoli   CLINICAL MICROBIOLOGY AND INFECTION

Class 1 Integrons and Salmonella Genomic Island 1 Among Salmonella enterica Isolated from Poultry and Swine

(2008) Sirintip Khemtong et al.   Microbial Drug Resistance