The Salmonella enterica Pan-genome

A Closer Look at Bacteroides: Phylogenetic Relationship and Genomic Implications of a Life in the Human Gut

(2011) Fredrik H. Karlsson et al.   MICROBIAL ECOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss

(2010) Henk C den Bakker et al.   BMC GENOMICS

So similar, yet so different: uncovering distinctive features in the genomes of Salmonella enterica serovars Typhimurium and Typhi

(2010) Sébastien C. Sabbagh et al.   FEMS MICROBIOLOGY LETTERS

Comparison of 61 Sequenced Escherichia coli Genomes

(2010) Oksana Lukjancenko et al.   MICROBIAL ECOLOGY

Intracellular survival of Salmonella enterica serovar Typhi in human macrophages is independent of Salmonella pathogenicity island (SPI)-2

(2010) C. G. Forest et al.   MICROBIOLOGY-SGM

Genomic Characterization of Campylobacter jejuni Strain M1

(2010) Carsten Friis et al.   PLoS One

Standard operating procedure for computing pangenome trees

(2010) Lars Snipen et al.   Standards in Genomic Sciences

Antimicrobial Resistance-Conferring Plasmids with Similarity to Virulence Plasmids from Avian Pathogenic Escherichia coli Strains in Salmonella enterica Serovar Kentucky Isolates from Poultry

(2009) W. F. Fricke et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi

(2009) Kathryn E Holt et al.   BMC GENOMICS

Microbial comparative pan-genomics using binomial mixture models

(2009) Lars Snipen et al.   BMC GENOMICS

Pathogenesis of enteric Salmonella infections

(2009) Guntram A Grassl et al.   CURRENT OPINION IN GASTROENTEROLOGY

Genome-wide identification of novel genomic islands that contribute toSalmonellavirulence in mouse systemic infection

(2009) Takeshi Haneda et al.   FEMS MICROBIOLOGY LETTERS

Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype

(2009) R. A. Kingsley et al.   GENOME RESEARCH

Short-Term Signatures of Evolutionary Change in the Salmonella enterica Serovar Typhimurium 14028 Genome

(2009) T. Jarvik et al.   JOURNAL OF BACTERIOLOGY

Molecular Characterization of Extended-Spectrum Cephalosporinase-ProducingSalmonella entericaSerovar Choleraesuis Isolates from Patients in Thailand and Denmark

(2009) Pantip Sirichote et al.   JOURNAL OF CLINICAL MICROBIOLOGY

On the Origins of a Vibrio Species

(2009) Tammi Vesth et al.   MICROBIAL ECOLOGY

GenBank

(2009) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Salmonella paratyphi C: Genetic Divergence from Salmonella choleraesuis and Pathogenic Convergence with Salmonella typhi

(2009) Wei-Qiao Liu et al.   PLoS One

Supplement 2003–2007 (No. 47) to the White-Kauffmann-Le Minor scheme

(2009) Martine Guibourdenche et al.   RESEARCH IN MICROBIOLOGY

Genome Project Standards in a New Era of Sequencing

(2009) P. S. G. Chain et al.   SCIENCE

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

(2009) Marie Touchon et al.   PLoS Genetics

Comparative genomics: the bacterial pan-genome

(2008) Hervé Tettelin et al.   CURRENT OPINION IN MICROBIOLOGY

Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways

(2008) N. R. Thomson et al.   GENOME RESEARCH

The Complete Genome Sequence of Escherichia coli DH10B: Insights into the Biology of a Laboratory Workhorse

(2008) T. Durfee et al.   JOURNAL OF BACTERIOLOGY

Molecular Phylogeny of the Salmonellae: Relationships among Salmonella Species and Subspecies Determined from Four Housekeeping Genes and Evidence of Lateral Gene Transfer Events

(2008) J. R. McQuiston et al.   JOURNAL OF BACTERIOLOGY

The genome BLASTatlas—a GeneWiz extension for visualization of whole-genome homology

(2008) Peter F. Hallin et al.   Molecular BioSystems

From bench to bedside: stealth of enteroinvasive pathogens

(2008) Renée M. Tsolis et al.   NATURE REVIEWS MICROBIOLOGY

Salmonellae interplay with host cells

(2007) Andrea Haraga et al.   NATURE REVIEWS MICROBIOLOGY