Three-dimensional virtual refocusing of fluorescence microscopy images using deep learning

Occurrence of the potent mutagens 2- nitrobenzanthrone and 3-nitrobenzanthrone in fine airborne particles

(2019) Aldenor G. Santos et al.   Scientific Reports

Instantaneous isotropic volumetric imaging of fast biological processes

(2019) Nils Wagner et al.   NATURE METHODS

Applications, promises, and pitfalls of deep learning for fluorescence image reconstruction

(2019) Chinmay Belthangady et al.   NATURE METHODS

On the use of deep learning for computational imaging

(2019) George Barbastathis et al.   Optica

Deep learning massively accelerates super-resolution localization microscopy

(2018) Wei Ouyang et al.   NATURE BIOTECHNOLOGY

Deep Learning Enhanced Mobile-Phone Microscopy

(2018) Yair Rivenson et al.   ACS Photonics

Deep-STORM: super-resolution single-molecule microscopy by deep learning

(2018) Elias Nehme et al.   Optica

Extended depth-of-field in holographic imaging using deep-learning-based autofocusing and phase recovery

(2018) Yichen Wu et al.   Optica

Content-aware image restoration: pushing the limits of fluorescence microscopy

(2018) Martin Weigert et al.   NATURE METHODS

Deep learning enables cross-modality super-resolution in fluorescence microscopy

(2018) Hongda Wang et al.   NATURE METHODS

Deep learning optical-sectioning method

(2018) Xiaoyu Zhang et al.   OPTICS EXPRESS

TrackMate: An open and extensible platform for single-particle tracking

(2017) Jean-Yves Tinevez et al.   METHODS

Automatically tracking neurons in a moving and deforming brain

(2017) Jeffrey P. Nguyen et al.   PLoS Computational Biology

Deep learning microscopy

(2017) Yair Rivenson et al.   Optica

DiffuserCam: lensless single-exposure 3D imaging

(2017) Nick Antipa et al.   Optica

High-magnification super-resolution FINCH microscopy using birefringent crystal lens interferometers

(2016) Nisan Siegel et al.   Nature Photonics

Accurate Automatic Detection of Densely Distributed Cell Nuclei in 3D Space

(2016) Yu Toyoshima et al.   PLoS Computational Biology

Compressive light-field microscopy for 3D neural activity recording

(2016) Nicolas C. Pégard et al.   Optica

SPED Light Sheet Microscopy: Fast Mapping of Biological System Structure and Function

(2015) Raju Tomer et al.   CELL

Intact-Brain Analyses Reveal Distinct Information Carried by SNc Dopamine Subcircuits

(2015) Talia N. Lerner et al.   CELL

Global Brain Dynamics Embed the Motor Command Sequence of Caenorhabditis elegans

(2015) Saul Kato et al.   CELL

MultiFocus Polarization Microscope (MF-PolScope) for 3D polarization imaging of up to 25 focal planes simultaneously

(2015) Sara Abrahamsson et al.   OPTICS EXPRESS

Whole-brain calcium imaging with cellular resolution in freely behavingCaenorhabditis elegans

(2015) Jeffrey P. Nguyen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Caenorhabditis elegans exhibit a coupling between the defecation motor program and directed locomotion

(2015) Stanislav Nagy et al.   Scientific Reports

Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy

(2014) Robert Prevedel et al.   NATURE METHODS

Enhancing the performance of the light field microscope using wavefront coding

(2014) Noy Cohen et al.   OPTICS EXPRESS

Optimal Point Spread Function Design for 3D Imaging

(2014) Yoav Shechtman et al.   PHYSICAL REVIEW LETTERS

Brain-wide 3D imaging of neuronal activity in Caenorhabditis elegans with sculpted light

(2013) Tina Schrödel et al.   NATURE METHODS

In-line FINCH super resolution digital holographic fluorescence microscopy using a high efficiency transmission liquid crystal GRIN lens

(2013) Gary Brooker et al.   OPTICS LETTERS

3-D PSF fitting for fluorescence microscopy: implementation and localization application

(2012) H. KIRSHNER et al.   JOURNAL OF MICROSCOPY

Fast multicolor 3D imaging using aberration-corrected multifocus microscopy

(2012) Sara Abrahamsson et al.   NATURE METHODS

Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging

(2011) Graham T Dempsey et al.   NATURE METHODS

QuickPALM: 3D real-time photoactivation nanoscopy image processing in ImageJ

(2010) Ricardo Henriques et al.   NATURE METHODS

Quantitative study of single molecule location estimation techniques

(2009) Anish V. Abraham et al.   OPTICS EXPRESS

Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function

(2009) S. R. P. Pavani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Three-dimensional sub–100 nm resolution fluorescence microscopy of thick samples

(2008) Manuel F Juette et al.   NATURE METHODS

Non-scanning motionless fluorescence three-dimensional holographic microscopy

(2008) Joseph Rosen et al.   Nature Photonics

Three-Dimensional Super-Resolution Imaging by Stochastic Optical Reconstruction Microscopy

(2008) B. Huang et al.   SCIENCE