Indigo Naturalis Ameliorates Dextran Sulfate Sodium-Induced Colitis in Mice by Modulating the Intestinal Microbiota Community

Development of an Indigo Naturalis Suppository for Topical Induction Therapy in Patients with Ulcerative Colitis

(2019) Yusuke Yoshimatsu et al.   DIGESTION

Indigo naturalis is effective even in treatment-refractory patients with ulcerative colitis: a post hoc analysis from the INDIGO study

(2019) Makoto Naganuma et al.   JOURNAL OF GASTROENTEROLOGY

Short‐term and long‐term outcomes of indigo naturalis treatment for inflammatory bowel disease

(2019) Yuichi Matsuno et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

Alteration of Gut Microbiota in Inflammatory Bowel Disease (IBD): Cause or Consequence? IBD Treatment Targeting the Gut Microbiome

(2019) Israr Khan et al.   Pathogens

Efficacy of Indigo Naturalis in a Multicenter Randomized Controlled Trial of Patients With Ulcerative Colitis

(2018) Makoto Naganuma et al.   GASTROENTEROLOGY

Tryptanthrin Protects Mice against Dextran Sulfate Sodium-Induced Colitis through Inhibition of TNF-α/NF-κB and IL-6/STAT3 Pathways

(2018) Zheng Wang et al.   MOLECULES

Absorption of Codonopsis pilosula Saponins by Coexisting Polysaccharides Alleviates Gut Microbial Dysbiosis with Dextran Sulfate Sodium-Induced Colitis in Model Mice

(2018) Yaping Jing et al.   Biomed Research International

Faecalibacterium prausnitzii: from microbiology to diagnostics and prognostics

(2017) Mireia Lopez-Siles et al.   ISME Journal

Worldwide incidence and prevalence of inflammatory bowel disease in the 21st century: a systematic review of population-based studies

(2017) Siew C Ng et al.   LANCET

Effects of indigo naturalis on colonic mucosal injuries and inflammation in rats with dextran sodium sulphate-induced ulcerative colitis

(2017) Yunliang Wang et al.   Experimental and Therapeutic Medicine

Gut microbiota drives the attenuation of dextran sulphate sodium-induced colitis by Huangqin decoction

(2017) Yang Yang et al.   Oncotarget

Apigenin inhibits colonic inflammation and tumorigenesis by suppressing STAT3-NF-κB signaling

(2017) Xiao-Yu Ai et al.   Oncotarget

Polysaccharides from Chrysanthemum morifolium Ramat ameliorate colitis rats by modulating the intestinal microbiota community

(2017) Jin-Hua Tao et al.   Oncotarget

Modulation of Gut Microbiome Composition and Function in Experimental Colitis Treated with Sulfasalazine

(2017) Haihui Zheng et al.   Frontiers in Microbiology

Influence of Microbiota on Intestinal Immune System in Ulcerative Colitis and Its Intervention

(2017) Sai-Long Zhang et al.   Frontiers in Immunology

Clinical Efficacy and Safety of Oral Qing-Dai in Patients with Ulcerative Colitis: A Single-Center Open-Label Prospective Study

(2016) Shinya Sugimoto et al.   DIGESTION

Oral versus intravenous iron replacement therapy distinctly alters the gut microbiota and metabolome in patients with IBD

(2016) Thomas Lee et al.   GUT

Acute dextran sulfate sodium (DSS)-induced colitis promotes gut microbial dysbiosis in mice

(2016) Peris Mumbi Munyaka et al.   JOURNAL OF BASIC MICROBIOLOGY

Indigo Naturalis ameliorates murine dextran sodium sulfate-induced colitis via aryl hydrocarbon receptor activation

(2016) Shoichiro Kawai et al.   JOURNAL OF GASTROENTEROLOGY

Indole compounds may be promising medicines for ulcerative colitis

(2016) Shinya Sugimoto et al.   JOURNAL OF GASTROENTEROLOGY

The association between the gut microbiota and the inflammatory bowel disease activity: a systematic review and meta-analysis

(2016) Michelle Prosberg et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY

Quantitative Analysis of Intestinal Flora of Uygur and Han Ethnic Chinese Patients with Ulcerative Colitis

(2016) Ping Yao et al.   Gastroenterology Research and Practice

An Integrative View of Microbiome-Host Interactions in Inflammatory Bowel Diseases

(2015) Marta Wlodarska et al.   Cell Host & Microbe

Immunopathogenesis of IBD: current state of the art

(2015) Heitor S. P. de Souza et al.   Nature Reviews Gastroenterology & Hepatology

Fusobacterium nucleatum, inflammation, and immunity: the fire within human gut

(2015) Arif Bashir et al.   TUMOR BIOLOGY

Qing-dai powder promotes recovery of colitis by inhibiting inflammatory responses of colonic macrophages in dextran sulfate sodium-treated mice

(2015) Hai-Tao Xiao et al.   Chinese Medicine

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery

(2014) Clarissa Schwab et al.   ISME Journal

Multiple approaches to characterize the microbial community in a thermophilic anaerobic digester running on swine manure: A case study

(2014) Nguyen Ngoc Tuan et al.   MICROBIOLOGICAL RESEARCH

Clostridium leptum group bacteria abundance and diversity in the fecal microbiota of patients with inflammatory bowel disease: a case–control study in India

(2013) Jayakanthan Kabeerdoss et al.   BMC GASTROENTEROLOGY

A decrease of the butyrate-producing speciesRoseburia hominisandFaecalibacterium prausnitziidefines dysbiosis in patients with ulcerative colitis

(2013) Kathleen Machiels et al.   GUT

Comparison of Xilei-san, a Chinese Herbal Medicine, and Dexamethasone in Mild/Moderate Ulcerative Proctitis: A Double-Blind Randomized Clinical Trial

(2013) Fangbin Zhang et al.   JOURNAL OF ALTERNATIVE AND COMPLEMENTARY MEDICINE

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Green Tea Polyphenols and Sulfasalazine have Parallel Anti-Inflammatory Properties in Colitis Models

(2013) Helieh S. Oz et al.   Frontiers in Immunology

Comparison of the Levels of Bacterial Diversity in Freshwater, Intertidal Wetland, and Marine Sediments by Using Millions of Illumina Tags

(2012) Yu Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Th22 Cells Are an Important Source of IL-22 for Host Protection against Enteropathogenic Bacteria

(2012) Rajatava Basu et al.   IMMUNITY

Placebo controlled evaluation of Xilei San, a herbal preparation in patients with intractable ulcerative proctitis

(2012) Ken Fukunaga et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Probiotic Bifidobacterium breve Induces IL-10-Producing Tr1 Cells in the Colon

(2012) Seong Gyu Jeon et al.   PLoS Pathogens

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease

(2011) Alan W Walker et al.   BMC MICROBIOLOGY

Decreased colonization of fecal Clostridium coccoides/Eubacterium rectale species from ulcerative colitis patients in an in vitro dynamic gut model with mucin environment

(2011) Joan Vermeiren et al.   FEMS MICROBIOLOGY ECOLOGY

Genetics and pathogenesis of inflammatory bowel disease

(2011) Bernard Khor et al.   NATURE

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Current and emerging drugs for the treatment of inflammatory bowel disease

(2011) John Triantafillidis   Drug Design Development and Therapy

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Spike sorting by a minimax reduced feature set based on finite differences

(2009) Chien-Chang Yen et al.   Journal of Physiological Sciences

Helicobacter species in the human colon

(2008) J. I. Keenan et al.   Colorectal Disease

A microbial symbiosis factor prevents intestinal inflammatory disease

(2008) Sarkis K. Mazmanian et al.   NATURE