City life alters the gut microbiome and stable isotope profiling of the eastern water dragon ( Intellagama lesueurii )

Gut microbiota in wild and captive Guizhou snub‐nosed monkeys, Rhinopithecus brelichi

(2019) Vanessa L. Hale et al.   AMERICAN JOURNAL OF PRIMATOLOGY

Human activity can influence the gut microbiota of Darwin's finches in the Galapagos Islands

(2019) Sarah A. Knutie et al.   MOLECULAR ECOLOGY

City life alters the gut microbiome and stable isotope profiling of the eastern water dragon ( Intellagama lesueurii )

(2019) Bethan L. Littleford‐Colquhoun et al.   MOLECULAR ECOLOGY

Diversity from genes to ecosystems: A unifying framework to study variation across biological metrics and scales

(2018) Oscar E. Gaggiotti et al.   Evolutionary Applications

Inside the guts of the city: Urban-induced alterations of the gut microbiota in a wild passerine

(2018) Aimeric Teyssier et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Drivers of Microbiome Biodiversity: A Review of General Rules, Feces, and Ignorance

(2018) Aspen T. Reese et al.   mBio

Gut microbiome transmission in lizards

(2017) Timothy J. Colston   MOLECULAR ECOLOGY

Archipelagos of the Anthropocene: rapid and extensive differentiation of native terrestrial vertebrates in a single metropolis

(2017) Bethan L. Littleford-Colquhoun et al.   MOLECULAR ECOLOGY

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

A framework for the identification of long-term social avoidance in longitudinal datasets

(2017) Kasha Strickland et al.   Royal Society Open Science

Habitat and indigenous gut microbes contribute to the plasticity of gut microbiome in oriental river prawn during rapid environmental change

(2017) Cheng-Yu Chen et al.   PLoS One

Physiological and microbial adjustments to diet quality permit facultative herbivory in an omnivorous lizard

(2016) Kevin D. Kohl et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Does adaptive radiation of a host lineage promote ecological diversity of its bacterial communities? A test using gut microbiota ofAnolislizards

(2016) Tiantian Ren et al.   MOLECULAR ECOLOGY

Gut microbial ecology of lizards: insights into diversity in the wild, effects of captivity, variation across gut regions and transmission

(2016) Kevin D. Kohl et al.   MOLECULAR ECOLOGY

Microbiome evolution along divergent branches of the vertebrate tree of life: what is known and unknown

(2016) Timothy J. Colston et al.   MOLECULAR ECOLOGY

Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?

(2016) Antton Alberdi et al.   TRENDS IN ECOLOGY & EVOLUTION

iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers)

(2016) T. C. Hsieh et al.   Methods in Ecology and Evolution

Weight gain in anorexia nervosa does not ameliorate the faecal microbiota, branched chain fatty acid profiles and gastrointestinal complaints

(2016) Isabelle Mack et al.   Scientific Reports

A healthy gastrointestinal microbiome is dependent on dietary diversity

(2016) Mark L. Heiman et al.   Molecular Metabolism

Stable Isotope Ratios as Biomarkers of Diet for Health Research

(2015) Diane M. O'Brien   Annual Review of Nutrition

Diet Dominates Host Genotype in Shaping the Murine Gut Microbiota

(2015) Rachel N. Carmody et al.   Cell Host & Microbe

Crosstalk between Gut Microbiota and Dietary Lipids Aggravates WAT Inflammation through TLR Signaling

(2015) Robert Caesar et al.   Cell Metabolism

Gut Microbiome: Westernization and the Disappearance of Intestinal Diversity

(2015) Nicola Segata   CURRENT BIOLOGY

Stable isotopes reveal links between human food inputs and urban ant diets

(2015) C. A. Penick et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes

(2015) Inés Martínez et al.   Cell Reports

Accelerated modern human-induced species losses: Entering the sixth mass extinction

(2015) G. Ceballos et al.   Science Advances

The social life of eastern water dragons: sex differences, spatial overlap and genetic relatedness

(2014) K. Strickland et al.   ANIMAL BEHAVIOUR

Unifying Species Diversity, Phylogenetic Diversity, Functional Diversity, and Related Similarity and Differentiation Measures Through Hill Numbers

(2014) Anne Chao et al.   Annual Review of Ecology Evolution and Systematics

Dietary effects on human gut microbiome diversity

(2014) Zhenjiang Xu et al.   BRITISH JOURNAL OF NUTRITION

Gut microbes of mammalian herbivores facilitate intake of plant toxins

(2014) Kevin D. Kohl et al.   ECOLOGY LETTERS

A Face in the Crowd: A Non-Invasive and Cost Effective Photo-Identification Methodology to Understand the Fine Scale Movement of Eastern Water Dragons

(2014) Riana Zanarivero Gardiner et al.   PLoS One

Increasing homogeneity in global food supplies and the implications for food security

(2014) C. K. Khoury et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Impact of Diet and Lifestyle on Gut Microbiota and Human Health

(2014) Michael Conlon et al.   Nutrients

Captivity results in disparate loss of gut microbial diversity in closely related hosts

(2014) K. D. Kohl et al.   Conservation Physiology

Plasticity and genetic adaptation mediate amphibian and reptile responses to climate change

(2013) Mark C. Urban et al.   Evolutionary Applications

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Analyses of the Stability and Core Taxonomic Memberships of the Human Microbiome

(2013) Kelvin Li et al.   PLoS One

Diet and phylogeny shape the gut microbiota of Antarctic seals: a comparison of wild and captive animals

(2012) Tiffanie M. Nelson et al.   ENVIRONMENTAL MICROBIOLOGY

Comparative meta-analysis of the effect of Lactobacillus species on weight gain in humans and animals

(2012) Matthieu Million et al.   MICROBIAL PATHOGENESIS

Enterococci in the Environment

(2012) Muruleedhara N. Byappanahalli et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Functional interactions between the gut microbiota and host metabolism

(2012) Valentina Tremaroli et al.   NATURE

Aggressive Transition between Alternative Male Social Tactics in a Long-Lived Australian Dragon (Physignathus lesueurii) Living at High Density

(2012) Troy A. Baird et al.   PLoS One

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Applying stable isotopes to examine food-web structure: an overview of analytical tools

(2011) Craig A. Layman et al.   BIOLOGICAL REVIEWS

Diversity and metabolic impact of intestinal Lactobacillus species in healthy adults and the elderly

(2011) Jelena Štšepetova et al.   BRITISH JOURNAL OF NUTRITION

Obesity-associated gut microbiota is enriched in Lactobacillus reuteri and depleted in Bifidobacterium animalis and Methanobrevibacter smithii

(2011) M Million et al.   INTERNATIONAL JOURNAL OF OBESITY

Phylogenetic analysis of the fecal microbial community in herbivorous land and marine iguanas of the Galápagos Islands using 16S rRNA-based pyrosequencing

(2011) Pei-Ying Hong et al.   ISME Journal

Comparing isotopic niche widths among and within communities: SIBER - Stable Isotope Bayesian Ellipses in R

(2011) Andrew L. Jackson et al.   JOURNAL OF ANIMAL ECOLOGY

Human nutrition, the gut microbiome and the immune system

(2011) Andrew L. Kau et al.   NATURE

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

A predictive framework and review of the ecological impacts of exotic plant invasions on reptiles and amphibians

(2010) Leigh J. Martin et al.   BIOLOGICAL REVIEWS

Stable isotopes evaluate exploitation of anthropogenic foods by the endangered San Joaquin kit fox (Vulpes macrotis mutica)

(2010) Seth D. Newsome et al.   JOURNAL OF MAMMALOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Tissue‐Carbon Incorporation Rates in Lizards: Implications for Ecological Studies Using Stable Isotopes in Terrestrial Ectotherms

(2010) Robin W. Warne et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY

Source Partitioning Using Stable Isotopes: Coping with Too Much Variation

(2010) Andrew C. Parnell et al.   PLoS One

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

(2010) C. De Filippo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Monitoring Bacterial Community of Human Gut Microbiota Reveals an Increase in Lactobacillus in Obese Patients and Methanogens in Anorexic Patients

(2009) Fabrice Armougom et al.   PLoS One

Worlds within worlds: evolution of the vertebrate gut microbiota

(2008) Ruth E. Ley et al.   NATURE REVIEWS MICROBIOLOGY

Clinical-scale investigation of stable isotopes in human blood: δ13C and δ15N from 406 patients at the Johns Hopkins Medical Institutions

(2008) Rebecca A. Kraft et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE

Adaptive Phenotypic Plasticity in Response to Climate Change in a Wild Bird Population

(2008) A. Charmantier et al.   SCIENCE

Human influences on rates of phenotypic change in wild animal populations

(2007) ANDREW P. HENDRY et al.   MOLECULAR ECOLOGY