Composition of the microbial communities in the gastrointestinal tract of perch ( Perca fluviatilis L. 1758) and cestodes parasitizing the perch digestive tract

Diet and other environmental factors shape the bacterial communities of fish gut in an eutrophic lake

(2018) E.N. Kashinskaya et al.   JOURNAL OF APPLIED MICROBIOLOGY

Inactivation of proteolytic enzymes by Eubothrium rugosum (Cestoda) from the gut of burbot Lota lota

(2017) Galina I. Izvekova et al.   FOLIA PARASITOLOGICA

Gut microbiome of juvenile coregonid fishes: comparison of sympatric species and their F1 hybrids

(2017) NataliaL. Belkova et al.   Fundamental and Applied Limnology

Dependence of pH values in the digestive tract of freshwater fishes on some abiotic and biotic factors

(2017) M. M. Solovyev et al.   HYDROBIOLOGIA

ABC transporters in the liver fluke Opisthorchis felineus

(2017) Viatcheslav A. Mordvinov et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Progress in fish gastrointestinal microbiota research

(2017) An R. Wang et al.   Reviews in Aquaculture

Parasitism perturbs the mucosal microbiome of Atlantic Salmon

(2017) M. S. Llewellyn et al.   Scientific Reports

The influence of weight and gender on intestinal bacterial community of wild largemouth bronze gudgeon (Coreius guichenoti, 1874)

(2016) Xuemei Li et al.   BMC MICROBIOLOGY

Immunity to gastrointestinal microparasites of fish

(2016) Ariadna Sitjà-Bobadilla et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Phylogenetic and functional characterization of the distal intestinal microbiome of rainbow troutOncorhynchus mykissfrom both farm and aquarium settings

(2016) P.P. Lyons et al.   JOURNAL OF APPLIED MICROBIOLOGY

The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels

(2016) Han Liu et al.   Scientific Reports

A high-resolution map of the gut microbiota in Atlantic salmon (Salmo salar): A basis for comparative gut microbial research

(2016) Karina Gajardo et al.   Scientific Reports

A new view of the fish gut microbiome: Advances from next-generation sequencing

(2015) Mahdi Ghanbari et al.   AQUACULTURE

Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota

(2015) Chris CR Smith et al.   ISME Journal

A comparative study on microbiota from the intestine of Prussian carp (Carassius gibelio) and their aquatic environmental compartments, using different molecular methods

(2015) E.N. Kashinskaya et al.   JOURNAL OF APPLIED MICROBIOLOGY

Cohabitation in the Intestine: Interactions among Helminth Parasites, Bacterial Microbiota, and Host Immunity

(2015) Lisa A. Reynolds et al.   JOURNAL OF IMMUNOLOGY

Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes

(2015) Laura Baldo et al.   PLoS One

Chronic Trichuris muris Infection in C57BL/6 Mice Causes Significant Changes in Host Microbiota and Metabolome: Effects Reversed by Pathogen Clearance

(2015) Ashley Houlden et al.   PLoS One

Extensive diversity of Rickettsiales bacteria in two species of ticks from China and the evolution of the Rickettsiales

(2014) Yan-Jun Kang et al.   BMC EVOLUTIONARY BIOLOGY

Comparative study on gastrointestinal microbiota of eight fish species with different feeding habits

(2014) J. Li et al.   JOURNAL OF APPLIED MICROBIOLOGY

Feeding habits and ontogenic changes in digestive enzyme patterns in five freshwater teleosts

(2014) M. M. Solovyev et al.   JOURNAL OF FISH BIOLOGY

Intestinal microbiota in fishes: what's known and what's not

(2014) Kendall D. Clements et al.   MOLECULAR ECOLOGY

Individual diet has sex-dependent effects on vertebrate gut microbiota

(2014) Daniel I. Bolnick et al.   Nature Communications

Taxonomic and functional metagenomic profiling of gastrointestinal tract microbiome of the farmed adult turbot (Scophthalmus maximus)

(2013) Mengxin Xing et al.   FEMS MICROBIOLOGY ECOLOGY

Factors influencing the grass carp gut microbiome and its effect on metabolism

(2013) Jiajia Ni et al.   FEMS MICROBIOLOGY ECOLOGY

Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish

(2013) Lin Ye et al.   ISME Journal

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Genetic Detection of Pseudomonas spp. in Commercial Amazonian Fish

(2013) Alba Ardura et al.   International Journal of Environmental Research and Public Health

Enzyme-producing bacteria isolated from fish gut: a review

(2012) A.K. Ray et al.   AQUACULTURE NUTRITION

Alterations in the Porcine Colon Microbiota Induced by the Gastrointestinal Nematode Trichuris suis

(2012) Robert W. Li et al.   INFECTION AND IMMUNITY

Hydrolytic activity of symbiotic microflora enzymes in pike (Esox lucius L.) intestines

(2012) G. I. Izvekova et al.   Inland Water Biology

Ultrastructure adaptations of symbiotic bacteria associated with freshwater fish and their cestode parasites

(2012) Zh. V. Korneva et al.   Inland Water Biology

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Composition, Diversity, and Origin of the Bacterial Community in Grass Carp Intestine

(2012) Shangong Wu et al.   PLoS One

Influence of the diet on the microbial diversity of faecal and gastrointestinal contents in gilthead sea bream (Sparus aurata) and intestinal contents in goldfish (Carassius auratus)

(2011) Flávia Cristina de Paula Silva et al.   FEMS MICROBIOLOGY ECOLOGY

Analysis of bacterial diversity in the intestine of grass carp (Ctenopharyngodon idellus) based on 16S rDNA gene sequences

(2010) Shaofeng Han et al.   AQUACULTURE RESEARCH

Role of gastrointestinal microbiota in fish

(2010) Sukanta K Nayak   AQUACULTURE RESEARCH

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Alteration of the murine gut microbiota during infection with the parasitic helminth Heligmosomoides polygyrus

(2010) Seth T. Walk et al.   INFLAMMATORY BOWEL DISEASES

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS