Structural and functional aspects of mannuronic acid–specific PL6 alginate lyase from the human gut microbe Bacteroides cellulosilyticus

Discovery of novel carbohydrate-active enzymes through the rational exploration of the protein sequences space

(2019) William Helbert et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural insights into a novel Ca2+-independent PL-6 alginate lyase from Vibrio OU02 identify the possible subsites responsible for product distribution

(2019) Qianqian Lyu et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Ancient acquisition of “alginate utilization loci” by human gut microbiota

(2018) Sophie Mathieu et al.   Scientific Reports

DIALS: implementation and evaluation of a new integration package

(2018) Graeme Winter et al.   Acta Crystallographica Section D-Structural Biology

Biphasic cellular adaptations and ecological implications of Alteromonas macleodii degrading a mixture of algal polysaccharides

(2018) Hanna Koch et al.   ISME Journal

Microencapsulation of Lactobacillus salivarious Li01 for enhanced storage viability and targeted delivery to gut microbiota

(2017) Mingfei Yao et al.   FOOD HYDROCOLLOIDS

Novel Molecular Insights into the Catalytic Mechanism of Marine Bacterial Alginate Lyase AlyGC from Polysaccharide Lyase Family 6

(2017) Fei Xu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Prospects of brown seaweed polysaccharides (BSP) as prebiotics and potential immunomodulators

(2017) Chigozie Louis Okolie et al.   JOURNAL OF FOOD BIOCHEMISTRY

Degradation of Marine Algae-Derived Carbohydrates by Bacteroidetes Isolated from Human Gut Microbiota

(2017) Miaomiao Li et al.   Marine Drugs

PULDB: the expanded database of Polysaccharide Utilization Loci

(2017) Nicolas Terrapon et al.   NUCLEIC ACIDS RESEARCH

Bacterial alginate production: an overview of its biosynthesis and potential industrial production

(2017) Viviana Urtuvia et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Dietary pectic glycans are degraded by coordinated enzyme pathways in human colonic Bacteroides

(2017) Ana S. Luis et al.   Nature Microbiology

Comparative study on the in vitro effects of Pseudomonas aeruginosa and seaweed alginates on human gut microbiota

(2017) Shaofeng Bai et al.   PLoS One

In vitro fermentation of alginate and its derivatives by human gut microbiota

(2016) Miaomiao Li et al.   ANAEROBE

Identification and characterization of a bacterial hyaluronidase and its production in recombinant form

(2016) Luciano Messina et al.   FEBS LETTERS

Uncovering the Catalytic Direction of Chondroitin AC Exolyase

(2016) Feng-Xin Yin et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Discovery of a Novel Alginate Lyase fromNitratiruptorsp. SB155-2 Thriving at Deep-sea Hydrothermal Vents and Identification of the Residues Responsible for Its Heat Stability

(2016) Akira Inoue et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

Functional Exploration of the Polysaccharide Lyase Family PL6

(2016) Sophie Mathieu et al.   PLoS One

Characterization and Immunological Evaluation of Low-Molecular- Weight Alginate Derivatives

(2015) Xu Xu et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Cloning and characterization of the first polysaccharide lyase family 6 oligoalginate lyase from marineShewanellasp. Kz7

(2015) Shangyong Li et al.   JOURNAL OF BIOCHEMISTRY

OPLS3: A Force Field Providing Broad Coverage of Drug-like Small Molecules and Proteins

(2015) Edward Harder et al.   Journal of Chemical Theory and Computation

New ways to boost molecular dynamics simulations

(2015) Elmar Krieger et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Uronic polysaccharide degrading enzymes

(2014) Marie-Line Garron et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Functional characterization of polysaccharide utilization loci in the marine Bacteroidetes ‘Gramella forsetii’ KT0803

(2014) Antje Kabisch et al.   ISME Journal

Catalytic Mechanism and Mode of Action of the Periplasmic Alginate Epimerase AlgG

(2014) Francis Wolfram et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Molecular Insight into the Role of the N-terminal Extension in the Maturation, Substrate Recognition, and Catalysis of a Bacterial Alginate Lyase from Polysaccharide Lyase Family 18

(2014) Sheng Dong et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structure of a PL17 Family Alginate Lyase Demonstrates Functional Similarities among Exotype Depolymerases

(2014) David Park et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

How good are my data and what is the resolution?

(2013) Philip R. Evans et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Comparative Characterization of Two Marine Alginate Lyases fromZobellia galactanivoransReveals Distinct Modes of Action and Exquisite Adaptation to Their Natural Substrate

(2013) François Thomas et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III

(2012) Bunzo Mikami et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Towards automated crystallographic structure refinement withphenix.refine

(2012) Pavel V. Afonine et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

FLX Pyrosequencing Analysis of the Effects of the Brown-Algal Fermentable Polysaccharides Alginate and Laminaran on Rat Cecal Microbiotas

(2012) Choa An et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular cloning, purification, and characterization of a novel polyMG-specific alginate lyase responsible for alginate MG block degradation in Stenotrophomas maltophilia KJ-2

(2012) Su In Lee et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Functional Characterization of AlgL, an Alginate Lyase from Pseudomonas aeruginosa

(2012) Emma K. Farrell et al.   BIOCHEMISTRY

cDNA cloning and bacterial expression of a PL-14 alginate lyase from a herbivorous marine snail Littorina brevicula

(2012) Mohammad Matiur Rahman et al.   CARBOHYDRATE RESEARCH

Improvement of molecular-replacement models withSculptor

(2011) Gábor Bunkóczi et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Overview of theCCP4 suite and current developments

(2011) Martyn D. Winn et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

A 1.5 Å resolution X-ray structure of the catalytic module ofCaldicellulosiruptor besciifamily 3 pectate lyase

(2011) Markus Alahuhta et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

The Original Michaelis Constant: Translation of the 1913 Michaelis–Menten Paper

(2011) Kenneth A. Johnson et al.   BIOCHEMISTRY

Alginate Sequencing: An Analysis of Block Distribution in Alginates Using Specific Alginate Degrading Enzymes

(2011) Olav Andreas Aarstad et al.   BIOMACROMOLECULES

Cloning and Characterization of a Novel Oligoalginate Lyase from a Newly Isolated Bacterium Sphingomonas sp. MJ-3

(2011) Hwan Hee Park et al.   MARINE BIOTECHNOLOGY

Structure-based prediction reveals capping motifs that inhibit  -helix aggregation

(2011) A. W. Bryan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

A hierarchical classification of polysaccharide lyases for glycogenomics

(2010) Vincent Lombard et al.   BIOCHEMICAL JOURNAL

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

Structural and mechanistic classification of uronic acid-containing polysaccharide lyases

(2010) M.-L. Garron et al.   GLYCOBIOLOGY

Crystal Structure of Exotype Alginate Lyase Atu3025 fromAgrobacterium tumefaciens

(2010) Akihito Ochiai et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Towards the comprehensive, rapid, and accurate prediction of the favorable tautomeric states of drug-like molecules in aqueous solution

(2010) Jeremy R. Greenwood et al.   JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN

Novel alginates prepared by independent control of chain stiffness and distribution of G-residues: Structure and gelling properties

(2009) Kåre A. Kristiansen et al.   CARBOHYDRATE POLYMERS

xia2: an expert system for macromolecular crystallography data reduction

(2009) G. Winter   JOURNAL OF APPLIED CRYSTALLOGRAPHY

Effect of Alginate on Satiation, Appetite, Gastric Function, and Selected Gut Satiety Hormones in Overweight and Obesity

(2009) Suwebatu T. Odunsi et al.   Obesity

Structural and Mutational Characterization of the Catalytic A-module of the Mannuronan C-5-epimerase AlgE4 fromAzotobacter vinelandii

(2008) Henriëtte J. Rozeboom et al.   JOURNAL OF BIOLOGICAL CHEMISTRY