A subfamily roadmap of the evolutionarily diverse glycoside hydrolase family 16 (GH16)

Functional annotation of orthologs in metagenomes: a case study of genes for the transformation of oceanic dimethylsulfoniopropionate

(2019) José M. González et al.   ISME Journal

The agar-specific hydrolase ZgAgaC from the marine bacterium Zobellia galactanivorans defines a new GH16 protein subfamily

(2019) Anaïs Naretto et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Comprehensive cross-genome survey and phylogeny of glycoside hydrolase family 16 members reveals the evolutionary origin of EG16 and XTH proteins in plant lineages

(2018) Hila Behar et al.   PLANT JOURNAL

ATP-dependent substrate reduction at an [Fe8S9] double-cubane cluster

(2018) Jae-Hun Jeoung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The biomass distribution on Earth

(2018) Yinon M. Bar-On et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Novel Enzyme Portfolio for Red Algal Polysaccharide Degradation in the Marine Bacterium Paraglaciecola hydrolytica S66T Encoded in a Sizeable Polysaccharide Utilization Locus

(2018) Mikkel Schultz-Johansen et al.   Frontiers in Microbiology

Revealing Unexplored Sequence-Function Space Using Sequence Similarity Networks

(2018) Janine N. Copp et al.   BIOCHEMISTRY

Substrate-assisted enzymatic formation of lysinoalanine in duramycin

(2018) Linna An et al.   Nature Chemical Biology

Structural enzymology reveals the molecular basis of substrate regiospecificity and processivity of an exemplar bacterial glycoside hydrolase family 74 endo-xyloglucanase

(2018) Gregory Arnal et al.   BIOCHEMICAL JOURNAL

Structural insights into marine carbohydrate degradation by family GH16 κ-carrageenases

(2017) Maria Matard-Mann et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Identification of a Functionally Unique Family of Penicillin-Binding Proteins

(2017) Michael A. Welsh et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Recent Advances in Marine Algae Polysaccharides: Isolation, Structure, and Activities

(2017) Shu-Ying Xu et al.   Marine Drugs

Post-translational modification of ribosomally synthesized peptides by a radical SAM epimerase in Bacillus subtilis

(2017) Alhosna Benjdia et al.   Nature Chemistry

Crystallographic insight into the evolutionary origins of xyloglucan endotransglycosylases and endohydrolases

(2017) Nicholas McGregor et al.   PLANT JOURNAL

Finding enzymes in the gut metagenome

(2017) Margaret E. Glasner   SCIENCE

A prominent glycyl radical enzyme in human gut microbiomes metabolizestrans-4-hydroxy-l-proline

(2017) B. J. Levin et al.   SCIENCE

Molecular Mechanism by which Prominent Human Gut Bacteroidetes Utilize Mixed-Linkage Beta-Glucans, Major Health-Promoting Cereal Polysaccharides

(2017) Kazune Tamura et al.   Cell Reports

Widespread distribution of encapsulin nanocompartments reveals functional diversity

(2017) Tobias W. Giessen et al.   Nature Microbiology

Dividing the Large Glycoside Hydrolase Family 43 into Subfamilies: a Motivation for Detailed Enzyme Characterization

(2016) Keith Mewis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees

(2016) Kazunori D. Yamada et al.   BIOINFORMATICS

Catalytic Mechanism of a Novel Glycoside Hydrolase Family 16 “Elongating” β-Transglycosylase

(2016) Zhen Qin et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Structural and functional analysis of yeast Crh1 and Crh2 transglycosylases

(2015) Noelia Blanco et al.   FEBS Journal

Ultrahigh-throughput discovery of promiscuous enzymes by picodroplet functional metagenomics

(2015) Pierre-Yves Colin et al.   Nature Communications

Structural and biochemical characterization of the laminarinaseZgLamCGH16fromZobellia galactanivoranssuggests preferred recognition of branched laminarin

(2015) Aurore Labourel et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

A sweet new wave: structures and mechanisms of enzymes that digest polysaccharides from marine algae

(2014) Jan-Hendrik Hehemann et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Carbohydrate-related enzymes of important Phytophthora plant pathogens

(2014) Henk Brouwer et al.   FUNGAL GENETICS AND BIOLOGY

Deciphering key features in protein structures with the new ENDscript server

(2014) Xavier Robert et al.   NUCLEIC ACIDS RESEARCH

Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

(2013) Zhongtao Zhao et al.   BMC GENOMICS

Structure-Function Analysis of a Broad SpecificityPopulus trichocarpaEndo-β-glucanase Reveals an Evolutionary Link between Bacterial Licheninases and PlantXTHGene Products

(2013) Jens M. Eklöf et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The abundance and variety of carbohydrate-active enzymes in the human gut microbiota

(2013) Abdessamad El Kaoutari et al.   NATURE REVIEWS MICROBIOLOGY

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

(2013) Jaina Mistry et al.   NUCLEIC ACIDS RESEARCH

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)

(2012) Henrik Aspeborg et al.   BMC EVOLUTIONARY BIOLOGY

Evolution of the βGRP/GNBP/β-1,3-glucanase family of insects

(2012) Austin L. Hughes   IMMUNOGENETICS

Biochemical and Structural Characterization of the Complex Agarolytic Enzyme System from the Marine BacteriumZobellia galactanivorans

(2012) Jan-Hendrik Hehemann et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Group III-A XTH Genes of Arabidopsis Encode Predominant Xyloglucan Endohydrolases That Are Dispensable for Normal Growth

(2012) N. Kaewthai et al.   PLANT PHYSIOLOGY

Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes

(2012) J.-H. Hehemann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution and Diversity of Plant Cell Walls: From Algae to Flowering Plants

(2011) Zoë A. Popper et al.   Annual Review of Plant Biology

N-terminal GNBP homology domain of Gram-negative binding protein 3 functions as a beta-1,3-glucan binding motif in Tenebrio molitor

(2011) Han-Na Lee et al.   BMB Reports

RAxML and FastTree: Comparing Two Methods for Large-Scale Maximum Likelihood Phylogeny Estimation

(2011) Kevin Liu et al.   PLoS One

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

A hierarchical classification of polysaccharide lyases for glycogenomics

(2010) Vincent Lombard et al.   BIOCHEMICAL JOURNAL

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Identification, characterization, and molecular cloning of a novel hyaluronidase, a member of glycosyl hydrolase family 16, fromPenicilliumspp

(2010) Mikio Bakke et al.   FEBS LETTERS

Consolidation of glycosyl hydrolase family 30: A dual domain 4/7 hydrolase family consisting of two structurally distinct groups

(2010) Franz J. St John et al.   FEBS LETTERS

Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota

(2010) Jan-Hendrik Hehemann et al.   NATURE

Heterogeneity in the chemistry, structure and function of plant cell walls

(2010) Rachel A Burton et al.   Nature Chemical Biology

The XTH Gene Family: An Update on Enzyme Structure, Function, and Phylogeny in Xyloglucan Remodeling

(2010) J. M. Eklof et al.   PLANT PHYSIOLOGY

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

A β-l-Arabinopyranosidase fromStreptomyces avermitilisIs a Novel Member of Glycoside Hydrolase Family 27

(2009) Hitomi Ichinose et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Using Sequence Similarity Networks for Visualization of Relationships Across Diverse Protein Superfamilies

(2009) Holly J. Atkinson et al.   PLoS One

Assembly of the Yeast Cell Wall

(2008) Enrico Cabib et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Analysis of nasturtiumTmNXG1 complexes by crystallography and molecular dynamics provides detailed insight into substrate recognition by family GH16 xyloglucanendo-transglycosylases andendo-hydrolases

(2008) Pekka Mark et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS