Fungal infection alters the selection, dispersal and drift processes structuring the amphibian skin microbiome

Amphibian fungal panzootic causes catastrophic and ongoing loss of biodiversity

(2019) Ben C. Scheele et al.   SCIENCE

Amphibian chytridiomycosis outbreak dynamics are linked with host skin bacterial community structure

(2018) Kieran A. Bates et al.   Nature Communications

Host and Aquatic Environment Shape the Amphibian Skin Microbiome but Effects on Downstream Resistance to the Pathogen Batrachochytrium dendrobatidis Are Variable

(2018) Andrea J. Jani et al.   Frontiers in Microbiology

Signatures of ecological processes in microbial community time series

(2018) Karoline Faust et al.   Microbiome

Neutral and selective dynamics in a synthetic microbial community

(2018) Nate J. Cira et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The microbiome in threatened species conservation

(2018) Annie G. West et al.   BIOLOGICAL CONSERVATION

Stan: A Probabilistic Programming Language

(2017) Bob Carpenter et al.   Journal of Statistical Software

Stochastic Community Assembly: Does It Matter in Microbial Ecology?

(2017) Jizhong Zhou et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Linking Statistical and Ecological Theory: Hubbell's Unified Neutral Theory of Biodiversity as a Hierarchical Dirichlet Process

(2017) Keith Harris et al.   PROCEEDINGS OF THE IEEE

Epidemic and endemic pathogen dynamics correspond to distinct host population microbiomes at a landscape scale

(2017) Andrea J. Jani et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Vertebrate Hosts as Islands: Dynamics of Selection, Immigration, Loss, Persistence, and Potential Function of Bacteria on Salamander Skin

(2016) Andrew H. Loudon et al.   Frontiers in Microbiology

Antifungal isolates database of amphibian skin-associated bacteria and function against emerging fungal pathogens

(2015) Douglas C. Woodhams et al.   ECOLOGY

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

A sampling formula for ecological communities with multiple dispersal syndromes

(2015) Thijs Janzen et al.   JOURNAL OF THEORETICAL BIOLOGY

Assessing the relative importance of neutral stochasticity in ecological communities

(2014) Mark Vellend et al.   OIKOS

The pathogenBatrachochytrium dendrobatidisdisturbs the frog skin microbiome during a natural epidemic and experimental infection

(2014) Andrea J. Jani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Maximum information entropy: a foundation for ecological theory

(2014) John Harte et al.   TRENDS IN ECOLOGY & EVOLUTION

Both species sorting and neutral processes drive assembly of bacterial communities in aquatic microcosms

(2013) Jack E. Lee et al.   FEMS MICROBIOLOGY ECOLOGY

Quantifying community assembly processes and identifying features that impose them

(2013) James C Stegen et al.   ISME Journal

Changes in assembly processes in soil bacterial communities following a wildfire disturbance

(2013) Scott Ferrenberg et al.   ISME Journal

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The amphibian skin-associated microbiome across species, space and life history stages

(2013) Jordan G. Kueneman et al.   MOLECULAR ECOLOGY

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Emerging fungal threats to animal, plant and ecosystem health

(2012) Matthew C. Fisher et al.   NATURE

Beyond biogeographic patterns: processes shaping the microbial landscape

(2012) China A. Hanson et al.   NATURE REVIEWS MICROBIOLOGY

The case for ecological neutral theory

(2012) James Rosindell et al.   TRENDS IN ECOLOGY & EVOLUTION

Treatment of amphibians infected with chytrid fungus: learning from failed trials with itraconazole, antimicrobial peptides, bacteria, and heat therapy

(2011) DC Woodhams et al.   DISEASES OF AQUATIC ORGANISMS

Species sorting and neutral processes are both important during the initial assembly of bacterial communities

(2011) Silke Langenheder et al.   ISME Journal

The Unified Neutral Theory of Biodiversity and Biogeography at Age Ten

(2011) James Rosindell et al.   TRENDS IN ECOLOGY & EVOLUTION

Local and regional factors influencing bacterial community assembly

(2011) Eva S. Lindström et al.   Environmental Microbiology Reports

Host species determines whether infection load increases beyond disease-causing thresholds following exposure to the amphibian chytrid fungus

(2010) M. P. Stockwell et al.   ANIMAL CONSERVATION

Opposing effects of competitive exclusion on the phylogenetic structure of communities

(2010) Margaret M. Mayfield et al.   ECOLOGY LETTERS

Cutaneous Bacteria of the Redback Salamander Prevent Morbidity Associated with a Lethal Disease

(2010) Matthew H. Becker et al.   PLoS One

Dynamics of an emerging disease drive large-scale amphibian population extinctions

(2010) V. T. Vredenburg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Combined niche and neutral effects in a microbial wastewater treatment community

(2010) I. D. Ofiteru et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conceptual Synthesis in Community Ecology

(2010) Mark Vellend   QUARTERLY REVIEW OF BIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The merging of community ecology and phylogenetic biology

(2009) Jeannine Cavender-Bares et al.   ECOLOGY LETTERS

Skin microbes on frogs prevent morbidity and mortality caused by a lethal skin fungus

(2009) Reid N Harris et al.   ISME Journal

Relative roles of niche and neutral processes in structuring a soil microbial community

(2009) Alex J Dumbrell et al.   ISME Journal

Maximum likelihood estimation of neutral model parameters for multiple samples with different degrees of dispersal limitation

(2008) Rampal S. Etienne   JOURNAL OF THEORETICAL BIOLOGY

Reconciling neutral community models and environmental filtering: theory and an empirical test

(2008) Franck Jabot et al.   OIKOS

Beyond neutral science

(2008) James S. Clark   TRENDS IN ECOLOGY & EVOLUTION