Dynamics of activating and repressive histone modifications in Drosophila neural stem cell lineages and brain tumors

The transcription factor odd-paired regulates temporal identity in transit-amplifying neural progenitors via an incoherent feed-forward loop

(2019) Merve Deniz Abdusselamoglu et al.   eLife

Origin and specification of type II neuroblasts in theDrosophilaembryo

(2018) José-Andrés Álvarez et al.   DEVELOPMENT

Time-resolved transcriptomics in neural stem cells identifies a v-ATPase/Notch regulatory loop

(2018) Sebastian Wissel et al.   JOURNAL OF CELL BIOLOGY

A comprehensive map coupling histone modifications with gene regulation in adult dopaminergic and serotonergic neurons

(2018) Erik Södersten et al.   Nature Communications

CATaDa reveals global remodelling of chromatin accessibility during stem cell differentiation in vivo

(2018) Gabriel N Aughey et al.   eLife

Polycomb and Trithorax Group Genes inDrosophila

(2017) Judith A. Kassis et al.   GENETICS

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Chromatin state changes during neural development revealed by in vivo cell-type specific profiling

(2017) Owen J. Marshall et al.   Nature Communications

Polycomb and Trithorax Group Genes inDrosophila

(2017) Judith A. Kassis et al.   GENETICS

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

(2016) Zuguang Gu et al.   BIOINFORMATICS

Chromatin remodeling during in vivo neural stem cells differentiating to neurons in early Drosophila embryos

(2016) Youqiong Ye et al.   CELL DEATH AND DIFFERENTIATION

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Transcriptomes of lineage-specificDrosophilaneuroblasts profiled by genetic targeting and robotic sorting

(2015) Ching-Po Yang et al.   DEVELOPMENT

SWI/SNF Complex Prevents Lineage Reversion and Induces Temporal Patterning in Neural Stem Cells

(2014) Elif Eroglu et al.   CELL

Control of neural stem cell self-renewal and differentiation in Drosophila

(2014) Kyung Hwa Kang et al.   CELL AND TISSUE RESEARCH

Transcriptional Regulation by Trithorax-Group Proteins

(2014) R. E. Kingston et al.   Cold Spring Harbor Perspectives in Biology

The Drosophila Sp8 transcription factor Buttonhead prevents premature differentiation of intermediate neural progenitors

(2014) Yonggang Xie et al.   eLife

Trithorax maintains the functional heterogeneity of neural stem cells through the transcription factor Buttonhead

(2014) Hideyuki Komori et al.   eLife

H3K27 modifications define segmental regulatory domains in the Drosophila bithorax complex

(2014) Sarah K Bowman et al.   eLife

Multiplexed Illumina sequencing libraries from picogram quantities of DNA

(2013) Sarah K Bowman et al.   BMC GENOMICS

Genome-wide Chromatin State Transitions Associated with Developmental and Environmental Cues

(2013) Jiang Zhu et al.   CELL

Dynamic Chromatin Remodeling Mediated by Polycomb Proteins Orchestrates Pancreatic Differentiation of Human Embryonic Stem Cells

(2013) Ruiyu Xie et al.   Cell Stem Cell

Abdominal-B and caudal inhibit the formation of specific neuroblasts in the Drosophila tail region

(2013) O. Birkholz et al.   DEVELOPMENT

FACS purification of Drosophila larval neuroblasts for next-generation sequencing

(2013) Heike Harzer et al.   Nature Protocols

Protein Complex-Based Analysis Framework for High-Throughput Data Sets

(2013) A. Vinayagam et al.   Science Signaling

Drosophila Polycomb complexes restrict neuroblast competence to generate motoneurons

(2012) J. J. Touma et al.   DEVELOPMENT

Drosophila neuroblasts: a model for stem cell biology

(2012) C. C. F. Homem et al.   DEVELOPMENT

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

FACS Purification and Transcriptome Analysis of Drosophila Neural Stem Cells Reveals a Role for Klumpfuss in Self-Renewal

(2012) Christian Berger et al.   Cell Reports

Genome-Wide Analysis of Self-Renewal in Drosophila Neural Stem Cells by Transgenic RNAi

(2011) Ralph A. Neumüller et al.   Cell Stem Cell

Regulation of cell growth by Notch signaling and its differential requirement in normal vs. tumor-forming stem cells in Drosophila

(2011) Y. Song et al.   GENES & DEVELOPMENT

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Regulating neural proliferation in the Drosophila CNS

(2010) Rita Sousa-Nunes et al.   CURRENT OPINION IN NEUROBIOLOGY

Asymmetric cell division: recent developments and their implications for tumour biology

(2010) Juergen A. Knoblich   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Ezh2, the histone methyltransferase of PRC2, regulates the balance between self-renewal and differentiation in the cerebral cortex

(2010) J. D. Pereira et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Monovalent and unpoised status of most genes in undifferentiated cell-enriched Drosophila testis

(2010) Qiang Gan et al.   GENOME BIOLOGY

Chromatin remodelling factor Mll1 is essential for neurogenesis from postnatal neural stem cells

(2009) Daniel A. Lim et al.   NATURE

Mechanisms of Polycomb gene silencing: knowns and unknowns

(2009) Jeffrey A. Simon et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Postembryonic development of transit amplifying neuroblast lineages in the Drosophila brain

(2009) Natalya Izergina et al.   Neural Development

Polycomb Limits the Neurogenic Competence of Neural Precursor Cells to Promote Astrogenic Fate Transition

(2009) Yusuke Hirabayashi et al.   NEURON

Functional Anatomy of Polycomb and Trithorax Chromatin Landscapes in Drosophila Embryos

(2009) Bernd Schuettengruber et al.   PLOS BIOLOGY

The Tumor Suppressors Brat and Numb Regulate Transit-Amplifying Neuroblast Lineages in Drosophila

(2008) Sarah K. Bowman et al.   DEVELOPMENTAL CELL

Identification ofDrosophilatype II neuroblast lineages containing transit amplifying ganglion mother cells

(2008) Jason Q. Boone et al.   Developmental Neurobiology

Amplification of neural stem cell proliferation by intermediate progenitor cells in Drosophila brain development

(2008) Bruno C Bello et al.   Neural Development

Stability and Dynamics of Polycomb Target Sites in Drosophila Development

(2008) Camilla Kwong et al.   PLoS Genetics