Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants

Set3 Is Required for Asexual Development, Aflatoxin Biosynthesis, and Fungal Virulence in Aspergillus flavus

(2019) Huahui Lan et al.   Frontiers in Microbiology

The HosA histone deacetylase regulates aflatoxin biosynthesis through direct regulation of aflatoxin cluster genes

(2019) Huahui Lan et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A highly efficient genetic system for the identification of a harzianum B biosynthetic gene cluster in Trichoderma hypoxylon

(2018) Huan Liu et al.   MICROBIOLOGY-SGM

The epigenetic reader SntB regulates secondary metabolism, development and global histone modifications in Aspergillus flavus

(2018) Brandon T. Pfannenstiel et al.   FUNGAL GENETICS AND BIOLOGY

Genetic Features of Aflatoxin-Associated Hepatocellular Carcinoma

(2017) Weilong Zhang et al.   GASTROENTEROLOGY

A scalable platform to identify fungal secondary metabolites and their gene clusters

(2017) Kenneth D Clevenger et al.   Nature Chemical Biology

Disruption of ku70 involved in non-homologous end-joining facilitates homologous recombination but increases temperature sensitivity in the phytopathogenic fungus Penicillium digitatum

(2016) Mónica Gandía et al.   Fungal Biology

Similar Mutation Rates but Highly Diverse Mutation Spectra in Ascomycete and Basidiomycete Yeasts

(2016) Hongan Long et al.   Genome Biology and Evolution

Evolution of Chemical Diversity in Echinocandin Lipopeptide Antifungal Metabolites

(2015) Qun Yue et al.   EUKARYOTIC CELL

The Spontaneous Mutation Rate in the Fission YeastSchizosaccharomyces pombe

(2015) Ashley Farlow et al.   GENETICS

Extensive de novo mutation rate variation between individuals and across the genome ofChlamydomonas reinhardtii

(2015) Rob W. Ness et al.   GENOME RESEARCH

Genome-Wide Estimates of Mutation Rates and Spectrum in Schizosaccharomyces pombe Indicate CpG Sites are Highly Mutagenic Despite the Absence of DNA Methylation

(2015) Megan G. Behringer et al.   G3-Genes Genomes Genetics

The Spontaneous Mutation Rate in the Fission YeastSchizosaccharomyces pombe

(2015) Ashley Farlow et al.   GENETICS

The Histone Acetyltransferase GcnE (GCN5) Plays a Central Role in the Regulation of Aspergillus Asexual Development

(2014) David Cánovas et al.   GENETICS

Precise estimates of mutation rate and spectrum in yeast

(2014) Y. O. Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of cellulolytic genes by McmA, the SRF-MADS box protein in Aspergillus nidulans

(2013) Yohei Yamakawa et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Finding the end: recruitment of telomerase to telomeres

(2013) Jayakrishnan Nandakumar et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Efficient homologous recombination with short length flanking fragments in Ku70 deficient Yarrowia lipolytica strains

(2012) Jonathan Verbeke et al.   BIOTECHNOLOGY LETTERS

Tools for high efficiency genetic manipulation of the human pathogen Penicillium marneffei

(2012) Hayley E. Bugeja et al.   FUNGAL GENETICS AND BIOLOGY

Variation in Base-Substitution Mutation in Experimental and Natural Lineages of Caenorhabditis Nematodes

(2012) Dee R. Denver et al.   Genome Biology and Evolution

Bisulfite Sequencing Reveals That Aspergillus flavus Holds a Hollow in DNA Methylation

(2012) Si-Yang Liu et al.   PLoS One

Whole Genome Sequencing of Mutation Accumulation Lines Reveals a Low Mutation Rate in the Social Amoeba Dictyostelium discoideum

(2012) Gerda Saxer et al.   PLoS One

Extraordinary genome stability in the ciliate Paramecium tetraurelia

(2012) W. Sung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The function and evolution of the Aspergillus genome

(2012) John G. Gibbons et al.   TRENDS IN MICROBIOLOGY

Maximum Saccharification of Cellulose Complex by an Enzyme Cocktail Supplemented with Cellulase from Newly Isolated Aspergillus fumigatus ECU0811

(2011) Dan Wang et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Ku80 Gene is Related to Non-Homologous End-Joining and Genome Stability in Aspergillus niger

(2011) Jinxiang Zhang et al.   CURRENT MICROBIOLOGY

Efficient gene targeting in ΔCc.ku70 or ΔCc.lig4 mutants of the agaricomycete Coprinopsis cinerea

(2011) Takehito Nakazawa et al.   FUNGAL GENETICS AND BIOLOGY

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

(2011) M. R. Andersen et al.   GENOME RESEARCH

Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris

(2011) Randy M Berka et al.   NATURE BIOTECHNOLOGY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Expanding the ku70 toolbox for filamentous fungi: establishment of complementation vectors and recipient strains for advanced gene analyses

(2010) Neuza D. S. P. Carvalho et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Use of a non-homologous end-joining-deficient strain (delta-ku70) of the biocontrol fungus Trichoderma virens to investigate the function of the laccase gene lcc1 in sclerotia degradation

(2010) Valentina Catalano et al.   CURRENT GENETICS

Secondary metabolism in fungi: does chromosomal location matter?

(2010) Jonathan M Palmer et al.   CURRENT OPINION IN MICROBIOLOGY

Highly efficient gene targeting in Penicillium chrysogenum using the bi-partite approach in Δlig4 or Δku70 mutants

(2010) Paulo de Boer et al.   FUNGAL GENETICS AND BIOLOGY

γ-Tubulin regulates the anaphase-promoting complex/cyclosome during interphase

(2010) Tania Nayak et al.   JOURNAL OF CELL BIOLOGY

Development and refinement of a high-efficiency gene-targeting system for Aspergillus flavus

(2010) Perng-Kuang Chang et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Telomere position effect is regulated by heterochromatin-associated proteins and NkuA in Aspergillus nidulans

(2010) J. M. Palmer et al.   MICROBIOLOGY-SGM

DNA resection in eukaryotes: deciding how to fix the break

(2010) Pablo Huertas   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

Evolution of the mutation rate

(2010) Michael Lynch   TRENDS IN GENETICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The Properties of Adaptive Walks in Evolving Populations of Fungus

(2009) Sijmen E. Schoustra et al.   PLOS BIOLOGY

Regulation of transcription of cellulases- and hemicellulases-encoding genes in Aspergillus niger and Hypocrea jecorina (Trichoderma reesei)

(2008) Astrid R. Stricker et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Gene deletion and allelic replacement in the filamentous fungus Podospora anserina

(2008) Riyad El-Khoury et al.   CURRENT GENETICS

Ku70orKu80deficiencies in the fungusBotrytis cinereafacilitate targeting of genes that are hard to knock out in a wild-type context

(2008) Mathias Choquer et al.   FEMS MICROBIOLOGY LETTERS

Requirement of LaeA for secondary metabolism and sclerotial production in Aspergillus flavus

(2008) Shubha P. Kale et al.   FUNGAL GENETICS AND BIOLOGY

Gene targeting in a nonhomologous end joining deficient Hypocrea jecorina

(2008) Zhang Guangtao et al.   JOURNAL OF BIOTECHNOLOGY

Genome instability: a mechanistic view of its causes and consequences

(2008) Andrés Aguilera et al.   NATURE REVIEWS GENETICS

A Cytosine Methyltransferase Homologue Is Essential for Sexual Development in Aspergillus nidulans

(2008) Dong W. Lee et al.   PLoS One

A genome-wide view of the spectrum of spontaneous mutations in yeast

(2008) M. Lynch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved gene targeting in Magnaporthe grisea by inactivation of MgKU80 required for non-homologous end joining

(2007) François Villalba et al.   FUNGAL GENETICS AND BIOLOGY