Article
Microbiology
Andrew S. Urquhart, Donald M. Gardiner
Summary: Fungal spore killers are genetic elements that promote their own inheritance by killing non-inheriting gametes. However, little is known about how they kill other spores within the fungal ascus. In this study, we investigate the spore killer protein SPOK1 in Podospora anserina and demonstrate that it kills by targeting DNA. This finding provides insights into the mechanisms of spore killers and their potential applications.
Article
Biochemistry & Molecular Biology
Alexander A. Zhgun, Mikhail A. Eldarov
Summary: The study demonstrates that the addition of exogenous polyamines can increase the production of target secondary metabolites in highly active fungal producers, as well as impact colony germination and morphological changes.
Article
Biochemistry & Molecular Biology
Alexander A. A. Zhgun, Mikhail A. A. Eldarov
Summary: The addition of exogenous polyamines has opposite effects on the production of antibiotic cephalosporin C. 1,3-diaminopropane increases the yield, while spermidine decreases the yield and leads to the accumulation of its precursor.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Biotechnology & Applied Microbiology
Joao Carlos Silva Conceicao, Tatiana Manzini Vieira, Antonio Eduardo Miller Crotti, Jeancarlo Pereira dos Anjos, Daniela Aparecida Chagas-Paula, Andre Alexandre Vieira, Eliane Oliveira Silva
Summary: The study demonstrates that Aspergillus brasiliensis can efficiently transform methyl p-coumarate into two new compounds, providing a potential bioremediation pathway for phenolic compounds. Through the use of analytical techniques such as gas chromatography coupled to mass spectrometry, this research is significant in advancing the understanding and potential applications of biological remediation of phenolic pollutants.
INTERNATIONAL BIODETERIORATION & BIODEGRADATION
(2021)
Article
Biotechnology & Applied Microbiology
Ryosuke Tsumura, Kazumi Sawada, Emi Kunitake, Jun-ichi Sumitani, Takashi Kawaguchi, Shuji Tani
Summary: The study investigates the induction mechanisms in Aspergillus by screening for new regulators involved in cellulose-responsive induction from T-DNA-inserted mutants. A mutant with the AasepM locus disrupted showed reduced expression of cbhI in response to cellulose. This mutant also exhibited delayed septation and decreased conidium formation, indicating the involvement of AaSepM in multiple cellulose-responsive signaling pathways.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
(2021)
Review
Biochemistry & Molecular Biology
Weronika Slizewska, Katarzyna Struszczyk-Swita, Olga Marchut-Mikolajczyk
Summary: Halophilic filamentous fungi are able to survive in extreme environments and counteract unfavorable conditions by producing multiple secondary metabolites.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Biotechnology & Applied Microbiology
Raphael Gabriel, Rebecca Mueller, Lena Floerl, Cynthia Hopson, Simon Harth, Timo Schuerg, Andre Fleissner, Steven W. Singer
Summary: The study confirmed that l-arabinose and cellobiose can induce CAZyme expression in T. aurantiacus, along with d-xylose, providing a path to produce thermotolerant enzymes. The expression of a wide variety of CAZymes, AA enzymes, and CEs was strongly induced by d-xylose and l-arabinose, while cellobiose mainly facilitated lower expression of cellulase genes. Additionally, multiple unfolded protein response genes and C5 sugar assimilation pathways were up-regulated during C5 sugar feeding.
BIOTECHNOLOGY FOR BIOFUELS
(2021)
Article
Biotechnology & Applied Microbiology
Laura Garcia-Calvo, Raquel Rodriguez-Castro, Ricardo Ullan, Silvia M. Albillos, Marta Fernandez-Aguado, Claudia M. Vicente, Kristin F. Degnes, Havard Sletta, Carlos Barreiro
Summary: This study identified a potential lignocellulolytic enzyme producer, Penicillium rubens, which overexpressed two genes (PrFaeA and PrFaeB) with feruloyl esterase (FAE) activity. Enzyme extracts from PrFaeB-enriched cultures showed optimal FAE activity at pH 5.0 and 50-55 degrees C, as confirmed by proteome analysis and mass spectrometry. The study also analyzed other lignocellulolytic activities, untargeted metabolites, and scaled up FAE production in stirred tank reactors. These findings highlight the potential of P. rubens as a promising lignocellulolytic enzyme producer.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
(2023)
Review
Biochemical Research Methods
Jia-Yu Shen, Qunfei Zhao, Qing-Li He
Summary: Fungi, especially filamentous fungi and macrofungi, have a strong ability to produce secondary metabolites and can be used as excellent chassis cells for producing valuable enzymes or natural products in synthetic biology. Establishing simple, reliable, and efficient techniques for genetic modification of fungi is crucial. The CRISPR/Cas9 system has been widely used for gene editing in life science research and has shown great potential in the genetic modification of filamentous and macrofungi. This paper discusses the various components and development of the CRISPR/Cas9 system, as well as the challenges and potential in using this system in filamentous fungi and macrofungi.
ACS SYNTHETIC BIOLOGY
(2023)
Review
Biotechnology & Applied Microbiology
Dujuan Liu, Sandra Garrigues, Ronald P. de Vries
Summary: The article summarizes the benefits and challenges of using filamentous fungi for the production of heterologous proteins, as well as various techniques commonly employed to improve the production yield. These techniques include the use of strong and inducible promoters, codon optimization, more efficient signal peptides for secretion, carrier proteins, engineering of glycosylation sites, regulation of the unfolded protein response and endoplasmic reticulum associated protein degradation, optimization of the intracellular transport process, regulation of unconventional protein secretion, and construction of protease-deficient strains.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
(2023)
Article
Biochemical Research Methods
Zofia Dorota Jarczynska, Katherina Garcia Vanegas, Marcus Deichmann, Christina Norskov Jensen, Marouschka Jasmijn Scheeper, Malgorzata Ewa Futyma, Tomas Strucko, Fabiano Jares Contesini, Tue Sparholt Jorgensen, Jakob Blaesbjerg Hoof, Uffe Hasbro Mortensen
Summary: This study developed a novel fungal in vivo DNA assembly toolbox for genetic engineering of filamentous fungi, based on research on fusion reactions of DNA fragments in fungi.
ACS SYNTHETIC BIOLOGY
(2022)
Article
Microbiology
Ronnie J. M. Lubbers, Ronald P. de Vries
Summary: Protocatechuic acid is an important chemical building block with pharmaceutical properties that can also be used to produce polymers and plastics. By identifying protocatechuate hydroxylase, it was found that a fungal cell factory can accumulate protocatechuic acid from plant-derived aromatic compounds. This research contributes to creating alternative methods for producing valuable aromatic compounds and platform chemicals.
Review
Biotechnology & Applied Microbiology
Audrey Masi, Robert L. Mach, Astrid R. Mach-Aigner
Summary: The pentose phosphate pathway (PPP) is a key pathway in metabolic engineering, providing NADPH and playing a role in the production of various compounds in fungi. Understanding the regulatory mechanisms of PPP can lead to targeted engineering and improved performance in industrial fungal strains.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
(2021)
Review
Microbiology
Estelle Menu, Quentin Filori, Jean-Charles Dufour, Stephane Ranque, Coralie L'Ollivier
Summary: Humans are frequently exposed to filamentous fungi, which are widespread in the environment. Under certain risk factors, these non-dermatophyte fungi can become opportunistic pathogens and cause various types of infections. The use of molecular tools and taxonomic revisions has led to the identification of an increasing number of fungi in humans. This review aims to inventory these filamentous fungi and provide details on their anatomical locations and the symptoms of infections.
Review
Agricultural Engineering
Rachma Wikandari, Nurul Hasniah, Mohammad J. Taherzadeh
Summary: This paper discusses the application of filamentous fungi in the food industry and explores the sustainability and prospects of using these fungi for resource conversion.
BIORESOURCE TECHNOLOGY
(2022)
Article
Ophthalmology
Nicoline M. Korthagen, Kiki van Bilsen, Sigrid M. A. Swagemakers, Jeroen van de Peppel, Jeroen Bastiaans, Peter J. van der Spek, P. Martin van Hagen, Willem A. Dik
BRITISH JOURNAL OF OPHTHALMOLOGY
(2015)
Correction
Developmental Biology
Pankaj Dhonukshe, Fang Huang, Carlos S. Galvan-Ampudia, Ari Pekka Mahonen, Juergen Kleine-Vehn, Jian Xu, Ab Quint, Kalika Prasad, Jiri Friml, Ben Scheres, Remko Offringa
Article
Biochemistry & Molecular Biology
Nicoline M. Korthagen, Jeroen Bastiaans, Jan C. van Meurs, Kiki van Bilsen, P. Martin van Hagen, Willem A. Dik
JOURNAL OF BIOCHEMICAL AND MOLECULAR TOXICOLOGY
(2015)
Article
Plant Sciences
Kees J. M. Boot, Sander C. Hille, Kees R. Libbenga, Lambertus A. Peletier, Paulina C. van Spronsen, Bert van Duijn, Remko Offringa
JOURNAL OF EXPERIMENTAL BOTANY
(2016)
Editorial Material
Biochemistry & Molecular Biology
Myckel E. J. Habets, Remko Offringa
Article
Biochemistry & Molecular Biology
Kasper van Gelderen, Martin van Rongen, An'an Liu, Anne Otten, Remko Offringa
Editorial Material
Biochemistry & Molecular Biology
Chuanyou Li, Jiayang Li, Kang Chong, Klaus Harter, Youngsook Lee, Jeffrey Leung, Enrico Martinoia, Makoto Matsuoka, Remko Offringa, Lijia Qu, Julian Schroeder, Yunde Zhao
Article
Plant Sciences
Emma Larsson, Adam Vivian-Smith, Remko Offringa, Eva Sundberg
FRONTIERS IN PLANT SCIENCE
(2017)
Article
Plant Sciences
Cibele Tesser da Costa, Marcos Letaif Gaeta, Jorge Ernesto de Araujo Mariath, Remko Offringa, Arthur Germano Fett-Neto
PLANT PHYSIOLOGY AND BIOCHEMISTRY
(2018)
Article
Biochemistry & Molecular Biology
Peter Marhavy, Jerome Duclercq, Benjamin Weller, Elena Feraru, Agnieszka Bielach, Remko Offringa, Jiri Friml, Claus Schwechheimer, Angus Murphy, Eva Benkova
Editorial Material
Biochemistry & Molecular Biology
Remko Offringa, Juergen Kleine-Vehn
JOURNAL OF INTEGRATIVE PLANT BIOLOGY
(2013)
Review
Plant Sciences
Myckel E. J. Habets, Remko Offringa
Article
Biochemistry & Molecular Biology
Mercedes Soriano, Hui Li, Cedric Jacquard, Gerco C. Angenent, Joan Krochko, Remko Offringa, Kim Boutilier
Article
Ophthalmology
Jeroen Bastiaans, Verena C. Mulder, Jan C. van Meurs, Marja Smits-te Nijenhuis, Conny van Holten-Neelen, P. Martin van Hagen, Willem A. Dik
ACTA OPHTHALMOLOGICA
(2018)
Article
Ophthalmology
Jeroen Bastiaans, Jan C. van Meurs, Verena C. Mulder, Nicole M. A. Nagtzaam, Marja Smits-te Nijenhuis, Diana C. M. Dufour-van den Goorbergh, P. Martin van Hagen, Herbert Hooijkaas, Willem A. Dik
INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE
(2014)