Simulated single molecule microscopy with SMeagol

Exploring the Dynamics of Cell Processes through Simulations of Fluorescence Microscopy Experiments

(2015) Juan Angiolini et al.   BIOPHYSICAL JOURNAL

Quantitative evaluation of software packages for single-molecule localization microscopy

(2015) Daniel Sage et al.   NATURE METHODS

A Computational Framework for Bioimaging Simulation

(2015) Masaki Watabe et al.   PLoS One

Objective comparison of particle tracking methods

(2014) Nicolas Chenouard et al.   NATURE METHODS

TestSTORM: Simulator for optimizing sample labeling and image acquisition in localization based super-resolution microscopy

(2014) József Sinkó et al.   Biomedical Optics Express

Extracting intracellular diffusive states and transition rates from single-molecule tracking data

(2013) Fredrik Persson et al.   NATURE METHODS

MesoRD 1.0: Stochastic reaction-diffusion simulations in the microscopic limit

(2012) D. Fange et al.   BIOINFORMATICS

Bayesian localization microscopy reveals nanoscale podosome dynamics

(2011) Susan Cox et al.   NATURE METHODS

Spatio-temporal correlations can drastically change the response of a MAPK pathway

(2010) K. Takahashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-density mapping of single-molecule trajectories with photoactivated localization microscopy

(2008) Suliana Manley et al.   NATURE METHODS

Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces

(2008) Rex A. Kerr et al.   SIAM JOURNAL ON SCIENTIFIC COMPUTING