Local versus global biological network alignment

Global Alignment of Protein-Protein Interaction Networks: A Survey

(2016) Ahed Elmsallati et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Double and multiple knockout simulations for genome-scale metabolic network reconstructions

(2015) Yaron Goldstein et al.   Algorithms for Molecular Biology

A multiobjective memetic algorithm for PPI network alignment

(2015) Connor Clark et al.   BIOINFORMATICS

MAGNA++: Maximizing Accuracy in Global Network Alignment via both node and edge conservation

(2015) V. Vijayan et al.   BIOINFORMATICS

L-GRAAL: Lagrangian graphlet-based network aligner

(2015) Noël Malod-Dognin et al.   BIOINFORMATICS

Global Network Alignment in the Context of Aging

(2015) Fazle Elahi Faisal et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

DualAligner : a dual alignment-based strategy to align protein interaction networks

(2014) Boon-Siew Seah et al.   BIOINFORMATICS

LocalAli: an evolutionary-based local alignment approach to identify functionally conserved modules in multiple networks

(2014) Jialu Hu et al.   BIOINFORMATICS

HubAlign: an accurate and efficient method for global alignment of protein–protein interaction networks

(2014) Somaye Hashemifar et al.   BIOINFORMATICS

MAGNA: Maximizing Accuracy in Global Network Alignment

(2014) Vikram Saraph et al.   BIOINFORMATICS

A comparison of algorithms for the pairwise alignment of biological networks

(2014) Connor Clark et al.   BIOINFORMATICS

NETAL: a new graph-based method for global alignment of protein–protein interaction networks

(2013) Behnam Neyshabur et al.   BIOINFORMATICS

Global network alignment using multiscale spectral signatures

(2012) R. Patro et al.   BIOINFORMATICS

Probabilistic Biological Network Alignment

(2012) A. Todor et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A Novel Framework for the Comparative Analysis of Biological Networks

(2012) Roland A. Pache et al.   PLoS One

AlignNemo: A Local Network Alignment Method to Integrate Homology and Topology

(2012) Giovanni Ciriello et al.   PLoS One

Integrative network alignment reveals large regions of global network similarity in yeast and human

(2011) Oleksii Kuchaiev et al.   BIOINFORMATICS

Topological network alignment uncovers biological function and phylogeny

(2010) O. Kuchaiev et al.   Journal of the Royal Society Interface

Literature-curated protein interaction datasets

(2008) Michael E Cusick et al.   NATURE METHODS