SYNBADm: a tool for optimization-based automated design of synthetic gene circuits

Multicriteria global optimization for biocircuit design

(2014) Irene Otero-Muras et al.   BMC Systems Biology

Directed Acyclic Graph-Based Technology Mapping of Genetic Circuit Models

(2014) Nicholas Roehner et al.   ACS Synthetic Biology

Optimal Part and Module Selection for Synthetic Gene Circuit Design Automation

(2014) Linh Huynh et al.   ACS Synthetic Biology

Tuning the dials of Synthetic Biology

(2013) J. A. J. Arpino et al.   MICROBIOLOGY-SGM

SBROME: A Scalable Optimization and Module Matching Framework for Automated Biosystems Design

(2013) Linh Huynh et al.   ACS Synthetic Biology

AutoBioCAD: Full Biodesign Automation of Genetic Circuits

(2012) Guillermo Rodrigo et al.   ACS Synthetic Biology

Automatic Design of Digital Synthetic Gene Circuits

(2011) Mario A. Marchisio et al.   PLoS Computational Biology

iBioSim: a tool for the analysis and design of genetic circuits

(2009) C. J. Myers et al.   BIOINFORMATICS

Towards programming languages for genetic engineering of living cells

(2009) M. Pedersen et al.   Journal of the Royal Society Interface

Computational design of synthetic gene circuits with composable parts

(2008) M.A. Marchisio et al.   BIOINFORMATICS

OptCircuit: an optimization based method for computational design of genetic circuits

(2008) Madhukar S Dasika et al.   BMC Systems Biology