Automatic Design of Digital Synthetic Gene Circuits

Synthetic biology: applications come of age

(2010) Ahmad S. Khalil et al.   NATURE REVIEWS GENETICS

ProMoT: modular modeling for systems biology

(2009) Sebastian Mirschel et al.   BIOINFORMATICS

RNA-based computation in live cells

(2009) Yaakov Benenson   CURRENT OPINION IN BIOTECHNOLOGY

Computational design tools for synthetic biology

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Advancing high-throughput gene synthesis technology

(2009) Jingdong Tian et al.   Molecular BioSystems

Diversity-based, model-guided construction of synthetic gene networks with predicted functions

(2009) Tom Ellis et al.   NATURE BIOTECHNOLOGY

Automated design of synthetic ribosome binding sites to control protein expression

(2009) Howard M Salis et al.   NATURE BIOTECHNOLOGY

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

Engineering transcription factors with novel DNA-binding specificity using comparative genomics

(2009) Tasha A. Desai et al.   NUCLEIC ACIDS RESEARCH

Golden Gate Shuffling: A One-Pot DNA Shuffling Method Based on Type IIs Restriction Enzymes

(2009) Carola Engler et al.   PLoS One

Design Principles for Riboswitch Function

(2009) Chase L. Beisel et al.   PLoS Computational Biology

TinkerCell: modular CAD tool for synthetic biology

(2009) Deepak Chandran et al.   Journal of Biological Engineering

Computational design of synthetic gene circuits with composable parts

(2008) M.A. Marchisio et al.   BIOINFORMATICS

OptCircuit: an optimization based method for computational design of genetic circuits

(2008) Madhukar S Dasika et al.   BMC Systems Biology

Mining logic gates in prokaryotic transcriptional regulation networks

(2008) Rafael Silva-Rocha et al.   FEBS LETTERS

Towards molecular computers that operate in a biological environment

(2008) Maya Kahan et al.   PHYSICA D-NONLINEAR PHENOMENA

Complex Riboswitches

(2008) R. R. Breaker   SCIENCE

Higher-Order Cellular Information Processing with Synthetic RNA Devices

(2008) M. N. Win et al.   SCIENCE