Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks

Representing and querying disease networks using graph databases

(2016) Artem Lysenko et al.   BioData Mining

NDEx, the Network Data Exchange

(2015) Dexter Pratt et al.   Cell Systems

A community-driven global reconstruction of human metabolism

(2013) Ines Thiele et al.   NATURE BIOTECHNOLOGY

CySBML: a Cytoscape plugin for SBML

(2012) M. Konig et al.   BIOINFORMATICS

JSBML: a flexible Java library for working with SBML

(2011) Andreas Dräger et al.   BIOINFORMATICS

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Towards a knowledge-based Human Protein Atlas

(2010) Mathias Uhlen et al.   NATURE BIOTECHNOLOGY

CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks

(2008) A. Funahashi et al.   PROCEEDINGS OF THE IEEE