Representing and querying disease networks using graph databases

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Tissue-based map of the human proteome

(2015) M. Uhlen et al.   SCIENCE

Gene Expression in Relation to Exhaled Nitric Oxide Identifies Novel Asthma Phenotypes with Unique Biomolecular Pathways

(2014) Brian D. Modena et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

An airway epithelial iNOS–DUOX2–thyroid peroxidase metabolome drives Th1/Th2 nitrative stress in human severe asthma

(2014) N Voraphani et al.   Mucosal Immunology

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

RefSeq microbial genomes database: new representation and annotation strategy

(2013) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

The Reactome pathway knowledgebase

(2013) David Croft et al.   NUCLEIC ACIDS RESEARCH

The circadian clock and asthma

(2013) Hannah J Durrington et al.   THORAX

The search for common pathways underlying asthma and COPD

(2013) N Hizawa et al.   International Journal of Chronic Obstructive Pulmonary Disease

Biomine: predicting links between biological entities using network models of heterogeneous databases

(2012) Lauri Eronen et al.   BMC BIOINFORMATICS

Gene Function Hypotheses for the Campylobacter jejuni Glycome Generated by a Logic-Based Approach

(2012) Michael J.E. Sternberg et al.   JOURNAL OF MOLECULAR BIOLOGY

Modeling biomedical experimental processes with OBI

(2012) Ryan R Brinkman et al.   Journal of Biomedical Semantics

Systems Approaches to Biology and Disease Enable Translational Systems Medicine

(2012) Leroy Hood et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

The IntAct molecular interaction database in 2012

(2011) S. Kerrien et al.   NUCLEIC ACIDS RESEARCH

Gene-Disease Network Analysis Reveals Functional Modules in Mendelian, Complex and Environmental Diseases

(2011) Anna Bauer-Mehren et al.   PLoS One

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

DrugBank 3.0: a comprehensive resource for 'Omics' research on drugs

(2010) C. Knox et al.   NUCLEIC ACIDS RESEARCH

Predictive, preventive, personalized and participatory medicine: back to the future

(2010) Charles Auffray et al.   Genome Medicine

Data integration for plant genomics--exemplars from the integration of Arabidopsis thaliana databases

(2009) A. Lysenko et al.   BRIEFINGS IN BIOINFORMATICS

BioPortal: ontologies and integrated data resources at the click of a mouse

(2009) N. F. Noy et al.   NUCLEIC ACIDS RESEARCH

Database resources of the National Center for Biotechnology Information

(2008) E. W. Sayers et al.   NUCLEIC ACIDS RESEARCH