QAcon: single model quality assessment using protein structural and contact information with machine learning techniques

ProQ2: estimation of model accuracy implemented in Rosetta

(2016) Karolis Uziela et al.   BIOINFORMATICS

Benchmarking Deep Networks for Predicting Residue-Specific Quality of Individual Protein Models in CASP11

(2016) Tong Liu et al.   Scientific Reports

Protein single-model quality assessment by feature-based probability density functions

(2016) Renzhi Cao et al.   Scientific Reports

Large-scale model quality assessment for improving protein tertiary structure prediction

(2015) Renzhi Cao et al.   BIOINFORMATICS

A large-scale conformation sampling and evaluation server for protein tertiary structure prediction and its assessment in CASP11

(2015) Jilong Li et al.   BMC BIOINFORMATICS

All-atom 3D structure prediction of transmembrane β-barrel proteins from sequences

(2015) Sikander Hayat et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Massive integration of diverse protein quality assessment methods to improve template based modeling in CASP11

(2015) Renzhi Cao et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Methods of model accuracy estimation can help selecting the best models from decoy sets: Assessment of model accuracy estimations in CASP11

(2015) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

SMOQ: a tool for predicting the absolute residue-specific quality of a single protein model with support vector machines

(2014) Renzhi Cao et al.   BMC BIOINFORMATICS

Designing and evaluating the MULTICOM protein local and global model quality prediction methods in the CASP10 experiment

(2014) Renzhi Cao et al.   BMC STRUCTURAL BIOLOGY

The ModFOLD4 server for the quality assessment of 3D protein models

(2013) Liam J. McGuffin et al.   NUCLEIC ACIDS RESEARCH

The Protein Model Portal—a comprehensive resource for protein structure and model information

(2013) Juergen Haas et al.   Database-The Journal of Biological Databases and Curation

MUFOLD-WQA: A new selective consensus method for quality assessment in protein structure prediction

(2011) Qingguo Wang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Voroprot: an interactive tool for the analysis and visualization of complex geometric features of protein structure

(2010) K. Olechnovic et al.   BIOINFORMATICS

A Novel Side-Chain Orientation Dependent Potential Derived from Random-Walk Reference State for Protein Fold Selection and Structure Prediction

(2010) Jian Zhang et al.   PLoS One

Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments

(2009) L. J. McGuffin et al.   BIOINFORMATICS

The ModFOLD server for the quality assessment of protein structural models

(2008) L. J. McGuffin   BIOINFORMATICS

Evaluating the absolute quality of a single protein model using structural features and support vector machines

(2008) Zheng Wang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS