Massive integration of diverse protein quality assessment methods to improve template based modeling in CASP11
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Massive integration of diverse protein quality assessment methods to improve template based modeling in CASP11
Authors
Keywords
-
Journal
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
Volume 84, Issue -, Pages 247-259
Publisher
Wiley
Online
2015-09-15
DOI
10.1002/prot.24924
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Large-scale model quality assessment for improving protein tertiary structure prediction
- (2015) Renzhi Cao et al. BIOINFORMATICS
- SMOQ: a tool for predicting the absolute residue-specific quality of a single protein model with support vector machines
- (2014) Renzhi Cao et al. BMC BIOINFORMATICS
- Designing and evaluating the MULTICOM protein local and global model quality prediction methods in the CASP10 experiment
- (2014) Renzhi Cao et al. BMC STRUCTURAL BIOLOGY
- lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests
- (2013) Valerio Mariani et al. BIOINFORMATICS
- CASP prediction center infrastructure and evaluation measures in CASP10 and CASP ROLL
- (2013) Andriy Kryshtafovych et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Interplay of I-TASSER and QUARK for template-based and ab initio protein structure prediction in CASP10
- (2013) Yang Zhang PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Assessment of template-based protein structure predictions in CASP10
- (2013) Yuanpeng J. Huang et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Improved model quality assessment using ProQ2
- (2012) Arjun Ray et al. BMC BIOINFORMATICS
- Template-based protein structure modeling using the RaptorX web server
- (2012) Morten Källberg et al. Nature Protocols
- Fast algorithm for population-based protein structural model analysis
- (2012) Jingfen Zhang et al. PROTEOMICS
- APOLLO: a quality assessment service for single and multiple protein models
- (2011) Z. Wang et al. BIOINFORMATICS
- MULTICOM: a multi-level combination approach to protein structure prediction and its assessments in CASP8
- (2010) Z. Wang et al. BIOINFORMATICS
- A Novel Side-Chain Orientation Dependent Potential Derived from Random-Walk Reference State for Protein Fold Selection and Structure Prediction
- (2010) Jian Zhang et al. PLoS One
- Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments
- (2009) L. J. McGuffin et al. BIOINFORMATICS
- Prediction of global and local model quality in CASP8 using the ModFOLD server
- (2009) Liam J. McGuffin PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- MUFOLD: A new solution for protein 3D structure prediction
- (2009) Jingfen Zhang et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Improved prediction of protein side-chain conformations with SCWRL4
- (2009) Georgii G. Krivov et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Evaluation of template-based models in CASP8 with standard measures
- (2009) Domenico Cozzetto et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Assessment of global and local model quality in CASP8 using Pcons and ProQ
- (2009) Per Larsson et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- The ModFOLD server for the quality assessment of protein structural models
- (2008) L. J. McGuffin BIOINFORMATICS
- I-TASSER server for protein 3D structure prediction
- (2008) Yang Zhang BMC BIOINFORMATICS
- Progress and challenges in protein structure prediction
- (2008) Yang Zhang CURRENT OPINION IN STRUCTURAL BIOLOGY
- Structural genomics: from genes to structures with valuable materials and many questions in between
- (2008) Brian G Fox et al. NATURE METHODS
- Fragment-HMM: A new approach to protein structure prediction
- (2008) Shuai Cheng Li et al. PROTEIN SCIENCE
- Specific interactions for ab initio folding of protein terminal regions with secondary structures
- (2008) Yuedong Yang et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Evaluating the absolute quality of a single protein model using structural features and support vector machines
- (2008) Zheng Wang et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- SELECTpro: effective protein model selection using a structure-based energy function resistant to BLUNDERs
- (2008) Arlo Randall et al. BMC STRUCTURAL BIOLOGY
- OPUS-PSP: An Orientation-dependent Statistical All-atom Potential Derived from Side-chain Packing
- (2007) Mingyang Lu et al. JOURNAL OF MOLECULAR BIOLOGY
- QMEAN: A comprehensive scoring function for model quality assessment
- (2007) Pascal Benkert et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction
- (2002) Hongyi Zhou et al. PROTEIN SCIENCE
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started