Morphology, Ultrastructure, and Mitochondrial Genome of the Marine Non-Photosynthetic Bicosoecid Cafileria marina Gen. et sp. nov.

Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes

(2019) Richard G. Dorrell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome size of chrysophytes varies with cell size and nutritional mode

(2018) Jana L. Olefeld et al.   ORGANISMS DIVERSITY & EVOLUTION

Diversity of Organellar Genomes in Non-photosynthetic Diatoms

(2018) Ryoma Kamikawa et al.   PROTIST

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

(2018) Yoann Seeleuthner et al.   Nature Communications

The Birth of Red Complex Plastids: One, Three, or Four Times?

(2018) Miroslav Oborník   TRENDS IN PARASITOLOGY

A Non-photosynthetic Diatom Reveals Early Steps of Reductive Evolution in Plastids

(2017) Ryoma Kamikawa et al.   MOLECULAR BIOLOGY AND EVOLUTION

Golgi apparatus self-organizes into the characteristic shape via postmitotic reassembly dynamics

(2017) Masashi Tachikawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pseudophyllomitus vesiculosus (Larsen and Patterson 1990) Lee, 2002, a Poorly Studied Phagotrophic Biflagellate is the First Characterized Member of Stramenopile Environmental Clade MAST-6

(2017) Takashi Shiratori et al.   PROTIST

Fueling the Cell Division Cycle

(2017) María Salazar-Roa et al.   TRENDS IN CELL BIOLOGY

Sphingomyelin metabolism controls the shape and function of the Golgi cisternae

(2017) Felix Campelo et al.   eLife

A Comparative Analysis of Mitochondrial Genomes in Eustigmatophyte Algae

(2016) Tereza Ševčíková et al.   Genome Biology and Evolution

A Phylogenomic Framework to Study the Diversity and Evolution of Stramenopiles (=Heterokonts)

(2016) Romain Derelle et al.   MOLECULAR BIOLOGY AND EVOLUTION

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

(2016) Todd M. Lowe et al.   NUCLEIC ACIDS RESEARCH

An Essential Role for COPI in mRNA Localization to Mitochondria and Mitochondrial Function

(2016) Dmitry Zabezhinsky et al.   Cell Reports

Heterokont Predator Develorapax marinus gen. et sp. nov. – A Model of the Ochrophyte Ancestor

(2016) Vladimir V. Aleoshin et al.   Frontiers in Microbiology

Mitochondria-Associated Membranes: Composition, Molecular Mechanisms, and Physiopathological Implications

(2015) Carlotta Giorgi et al.   ANTIOXIDANTS & REDOX SIGNALING

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Plastid proteome prediction for diatoms and other algae with secondary plastids of the red lineage

(2015) Ansgar Gruber et al.   PLANT JOURNAL

Genomic perspectives on the birth and spread of plastids: Fig. 1.

(2015) John M. Archibald   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mitochondrial synapses: intracellular communication and signal integration

(2015) Martin Picard   TRENDS IN NEUROSCIENCES

Updating algal evolutionary relationships through plastid genome sequencing: did alveolate plastids emerge through endosymbiosis of an ochrophyte?

(2015) Tereza Ševčíková et al.   Scientific Reports

Helfrich model of membrane bending: From Gibbs theory of liquid interfaces to membranes as thick anisotropic elastic layers

(2014) Felix Campelo et al.   ADVANCES IN COLLOID AND INTERFACE SCIENCE

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Ultrastructure and Phylogenetic Position of Regin rotiferus and Otto terricolus Genera et Species Novae (Bicosoecida, Heterokonta/Stramenopiles)

(2014) Christoffer Bugge Harder et al.   PROTIST

The others: our biased perspective of eukaryotic genomes

(2014) Javier del Campo et al.   TRENDS IN ECOLOGY & EVOLUTION

Syncytial Knots (Tenney-Parker Changes) in the Human Placenta

(2013) Norah M.E. Fogarty et al.   AMERICAN JOURNAL OF PATHOLOGY

Influence of nutrients and light on autotrophic, mixotrophic and heterotrophic freshwater chrysophytes

(2013) J Rottberger et al.   AQUATIC MICROBIAL ECOLOGY

Targeting of cytosolic mRNA to mitochondria: Naked RNA can bind to the mitochondrial surface

(2013) Morgane Michaud et al.   BIOCHIMIE

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Endoplasmic reticulum–mitochondria contacts: function of the junction

(2012) Ashley A. Rowland et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Perinuclear Mitochondrial Clustering Creates an Oxidant-Rich Nuclear Domain Required for Hypoxia-Induced Transcription

(2012) A.-B. Al-Mehdi et al.   Science Signaling

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Emerging Diversity within Chrysophytes, Choanoflagellates and Bicosoecids Based on Molecular Surveys

(2011) Javier del Campo et al.   PROTIST

ER Tubules Mark Sites of Mitochondrial Division

(2011) J. R. Friedman et al.   SCIENCE

Staying in touch: the molecular era of organelle contact sites

(2011) Yael Elbaz et al.   TRENDS IN BIOCHEMICAL SCIENCES

Phylogenomic Evidence for Separate Acquisition of Plastids in Cryptophytes, Haptophytes, and Stramenopiles

(2010) D. Baurain et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ultrastructure and Molecular Phylogenetic Position of a Novel Phagotrophic Stramenopile from Low Oxygen Environments: Rictus lutensis gen. et sp. nov. (Bicosoecida, incertae sedis)

(2010) Naoji Yubuki et al.   PROTIST

Morphology and Ultrastructure of Multiple Life Cycle Stages of the Photosynthetic Relative of Apicomplexa, Chromera velia

(2010) Miroslav Oborník et al.   PROTIST

Mitochondrial ‘kiss-and-run’: interplay between mitochondrial motility and fusion–fission dynamics

(2009) Xingguo Liu et al.   EMBO JOURNAL

Predation impact of ciliated and flagellated protozoa during a summer bloom of brown sulfur bacteria in a meromictic coastal lake

(2009) Alessandro Saccà et al.   FEMS MICROBIOLOGY ECOLOGY

Seven Gene Phylogeny of Heterokonts

(2009) Ingvild Riisberg et al.   PROTIST

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION

A photosynthetic alveolate closely related to apicomplexan parasites

(2008) Robert B. Moore et al.   NATURE