Antibiotic-Induced Perturbations Are Manifested in the Dominant Intestinal Bacterial Phyla of Atlantic Salmon

Lactobacillus Dominate in the Intestine of Atlantic Salmon Fed Dietary Probiotics

(2019) Shruti Gupta et al.   Frontiers in Microbiology

Disruption of the Gut Ecosystem by Antibiotics

(2018) Mi Young Yoon et al.   YONSEI MEDICAL JOURNAL

Current Status of the Use of Antibiotics and the Antimicrobial Resistance in the Chilean Salmon Farms

(2018) Claudio D. Miranda et al.   Frontiers in Microbiology

Extended antibiotic treatment in salmon farms select multiresistant gut bacteria with a high prevalence of antibiotic resistance genes

(2018) Sebastián Higuera-Llantén et al.   PLoS One

Intermediate Levels of Antibiotics May Increase Diversity of Colony Size Phenotype in Bacteria

(2018) Lewis Lee et al.   Computational and Structural Biotechnology Journal

Consumption of florfenicol-medicated feed alters the composition of the channel catfish intestinal microbiota including enriching the relative abundance of opportunistic pathogens

(2018) Erlong Wang et al.   AQUACULTURE

Host-microbe interaction in the gastrointestinal tract

(2017) Aimée Parker et al.   ENVIRONMENTAL MICROBIOLOGY

The Rising Tide of Antimicrobial Resistance in Aquaculture: Sources, Sinks and Solutions

(2017) Joy Watts et al.   Marine Drugs

Antibiotics reduce genetic diversity of core species in the honeybee gut microbiome

(2017) Kasie Raymann et al.   MOLECULAR ECOLOGY

Effects of oral florfenicol and azithromycin on gut microbiota and adipogenesis in mice

(2017) Rui Li et al.   PLoS One

Subtle Microbiome Manipulation Using Probiotics Reduces Antibiotic-Associated Mortality in Fish

(2017) Victor Schmidt et al.   mSystems

Antibiotic use and its consequences for the normal microbiome

(2016) Martin J. Blaser   SCIENCE

iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers)

(2016) T. C. Hsieh et al.   Methods in Ecology and Evolution

Antibiotics and the Human Gut Microbiome: Dysbioses and Accumulation of Resistances

(2016) M. P. Francino   Frontiers in Microbiology

Microbiome: Ecology of stable gut communities

(2016) Luke McNally et al.   Nature Microbiology

A high-resolution map of the gut microbiota in Atlantic salmon (Salmo salar): A basis for comparative gut microbial research

(2016) Karina Gajardo et al.   Scientific Reports

Metagenomic analysis provides insights into functional capacity in a hyperarid desert soil niche community

(2015) Surendra Vikram et al.   ENVIRONMENTAL MICROBIOLOGY

The biogeography of the atlantic salmon (Salmo salar) gut microbiome

(2015) Martin S Llewellyn et al.   ISME Journal

The ecology of the microbiome: Networks, competition, and stability

(2015) K. Z. Coyte et al.   SCIENCE

The outer mucus layer hosts a distinct intestinal microbial niche

(2015) Hai Li et al.   Nature Communications

The vocabulary of microbiome research: a proposal

(2015) Julian R. Marchesi et al.   Microbiome

Mechanism of Quinolone Action and Resistance

(2014) Katie J. Aldred et al.   BIOCHEMISTRY

Intestinal microbiota and its effects on the immune system

(2014) Maria Rescigno   CELLULAR MICROBIOLOGY

The Strengths of r- and K-Selection Shape Diversity-Disturbance Relationships

(2014) Kristin Bohn et al.   PLoS One

Oligotyping reveals community level habitat selection within the genus Vibrio

(2014) Victor T. Schmidt et al.   Frontiers in Microbiology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dietary synbiotic application modulates Atlantic salmon (Salmo salar) intestinal microbial communities and intestinal immunity

(2013) A. Abid et al.   FISH & SHELLFISH IMMUNOLOGY

The Mucin Muc2 Limits Pathogen Burdens and Epithelial Barrier Dysfunction during Salmonella enterica Serovar Typhimurium Colitis

(2013) Maryam Zarepour et al.   INFECTION AND IMMUNITY

Following the Mechanisms of Bacteriostatic versus Bactericidal Action Using Raman Spectroscopy

(2013) Silvie Bernatová et al.   MOLECULES

Control of pathogens and pathobionts by the gut microbiota

(2013) Nobuhiko Kamada et al.   NATURE IMMUNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

The gut microbiota — masters of host development and physiology

(2013) Felix Sommer et al.   NATURE REVIEWS MICROBIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Differential Effects of Antibiotic Therapy on the Structure and Function of Human Gut Microbiota

(2013) Ana Elena Pérez-Cobas et al.   PLoS One

Microbiota Regulate Intestinal Absorption and Metabolism of Fatty Acids in the Zebrafish

(2012) Ivana Semova et al.   Cell Host & Microbe

Bacteria as vitamin suppliers to their host: a gut microbiota perspective

(2012) Jean Guy LeBlanc et al.   CURRENT OPINION IN BIOTECHNOLOGY

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Whole-genome phylogenies of the family Bacillaceae and expansion of the sigma factor gene family in the Bacillus cereus species-group

(2011) Timothy R Schmidt et al.   BMC GENOMICS

Long-term impacts of antibiotic exposure on the human intestinal microbiota

(2010) C. Jernberg et al.   MICROBIOLOGY-SGM

How antibiotics kill bacteria: from targets to networks

(2010) Michael A. Kohanski et al.   NATURE REVIEWS MICROBIOLOGY

The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing

(2008) Les Dethlefsen et al.   PLOS BIOLOGY