QTL Mapping and Transcriptome Analysis to Identify Differentially Expressed Genes Induced by Septoria Tritici Blotch Disease of Wheat

Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome

(2018) Clémence Plissonneau et al.   BMC BIOLOGY

Practical breeding strategies to improve resistance to Septoria tritici blotch of wheat

(2018) Seyed Mahmoud Tabib Ghaffary et al.   EUPHYTICA

Comparative Transcriptomics Reveals How Wheat Responds to Infection by Zymoseptoria tritici

(2018) Xin Ma et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici

(2018) Cyrille Saintenac et al.   NATURE GENETICS

Comparative Transcriptome Profiles of Near-Isogenic Hexaploid Wheat Lines Differing for Effective Alleles at the 2DL FHB Resistance QTL

(2018) Chiara Biselli et al.   Frontiers in Plant Science

FRG3, a Target of slmiR482e-3p, Provides Resistance against the Fungal Pathogen Fusarium oxysporum in Tomato

(2018) Hui-Min Ji et al.   Frontiers in Plant Science

Proximal Phenotyping and Machine Learning Methods to Identify Septoria Tritici Blotch Disease Symptoms in Wheat

(2018) Firuz Odilbekov et al.   Frontiers in Plant Science

Genetic mapping of Stb19, a new resistance gene to Zymoseptoria tritici in wheat

(2018) Nannan Yang et al.   THEORETICAL AND APPLIED GENETICS

Quantitative trait locus mapping reveals complex genetic architecture of quantitative virulence in the wheat pathogen Zymoseptoria tritici

(2017) Ethan l. Stewart et al.   MOLECULAR PLANT PATHOLOGY

Comparative Transcriptome Analyses inZymoseptoria triticiReveal Significant Differences in Gene Expression Among Strains During Plant Infection

(2017) Javier Palma-Guerrero et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Non-target site SDHI resistance is present as standing genetic variation in field populations of Zymoseptoria tritici

(2017) Masao Yamashita et al.   PEST MANAGEMENT SCIENCE

A wheat NBS-LRR gene TaRGA19 participates in Lr19 -mediated resistance to Puccinia triticina

(2017) Li Jianyuan et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Dissecting the Molecular Interactions between Wheat and the Fungal Pathogen Zymoseptoria tritici

(2016) Graeme J. Kettles et al.   Frontiers in Plant Science

Integrated Metabolo-Transcriptomics Reveals Fusarium Head Blight Candidate Resistance Genes in Wheat QTL-Fhb2

(2016) Dhananjay Dhokane et al.   PLoS One

Zymoseptoria tritici: A major threat to wheat production, integrated approaches to control

(2015) Stefano F.F. Torriani et al.   FUNGAL GENETICS AND BIOLOGY

The impact of Septoria tritici Blotch disease on wheat: An EU perspective

(2015) Helen Fones et al.   FUNGAL GENETICS AND BIOLOGY

Genetics of resistance to Zymoseptoria tritici and applications to wheat breeding

(2015) James K.M. Brown et al.   FUNGAL GENETICS AND BIOLOGY

Cell biology of Zymoseptoria tritici : Pathogen cell organization and wheat infection

(2015) Gero Steinberg   FUNGAL GENETICS AND BIOLOGY

Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone inArabidopsis thaliana

(2015) ENJUN XU et al.   PLANT CELL AND ENVIRONMENT

Transcriptome and Metabolite Profiling of the Infection Cycle ofZymoseptoria triticion Wheat Reveals a Biphasic Interaction with Plant Immunity Involving Differential Pathogen Chromosomal Contributions and a Variation on the Hemibiotrophic Lifestyle Definition

(2015) Jason J. Rudd et al.   PLANT PHYSIOLOGY

Adult-plant resistance to Septoria tritici blotch in hexaploid spring wheat

(2015) Susanne Dreisigacker et al.   THEORETICAL AND APPLIED GENETICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array

(2014) Shichen Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Genetic analysis and fine mapping of RpsJS, a novel resistance gene to Phytophthora sojae in soybean [Glycine max (L.) Merr.]

(2014) Jutao Sun et al.   THEORETICAL AND APPLIED GENETICS

Genetic architecture of resistance to Septoria tritici blotch in European wheat

(2013) Thomas Miedaner et al.   BMC GENOMICS

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Streaming fragment assignment for real-time analysis of sequencing experiments

(2012) Adam Roberts et al.   NATURE METHODS

Update on mechanisms of azole resistance inMycosphaerella graminicolaand implications for future control

(2012) Hans J Cools et al.   PEST MANAGEMENT SCIENCE

Receptor-like kinase complexes in plant innate immunity

(2012) Christiaan Greeff et al.   Frontiers in Plant Science

Farming with fewer pesticides: EU pesticide review and resulting challenges for UK agriculture

(2011) R.J. Hillocks   CROP PROTECTION

New broad-spectrum resistance to septoria tritici blotch derived from synthetic hexaploid wheat

(2011) S. Mahmod Tabib Ghaffary et al.   THEORETICAL AND APPLIED GENETICS

Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis

(2011) Stephen B. Goodwin et al.   PLoS Genetics

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

Early stages of septoria tritici blotch epidemics of winter wheat: build-up, overseasoning, and release of primary inoculum

(2010) F. Suffert et al.   PLANT PATHOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Identification and location ofStb9, a gene for resistance to septoria tritici blotch in wheat cultivars Courtot and Tonic

(2009) L. Chartrain et al.   PLANT PATHOLOGY

Addressing drought tolerance in maize by transcriptional profiling and mapping

(2008) Rosanna Marino et al.   MOLECULAR GENETICS AND GENOMICS

Role of plant hormones in plant defence responses

(2008) Rajendra Bari et al.   PLANT MOLECULAR BIOLOGY