Quantitative trait locus mapping reveals complex genetic architecture of quantitative virulence in the wheat pathogen Zymoseptoria tritici

Comparative Transcriptome Analyses inZymoseptoria triticiReveal Significant Differences in Gene Expression Among Strains During Plant Infection

(2017) Javier Palma-Guerrero et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

QTL mapping of temperature sensitivity reveals candidate genes for thermal adaptation and growth morphology in the plant pathogenic fungus Zymoseptoria tritici

(2016) M H Lendenmann et al.   HEREDITY

An Improved Method for Measuring Quantitative Resistance to the Wheat PathogenZymoseptoria triticiUsing High-Throughput Automated Image Analysis

(2016) Ethan L. Stewart et al.   PHYTOPATHOLOGY

The Age of Effectors: Genome-Based Discovery and Applications

(2016) Hesham A. Y. Gibriel et al.   PHYTOPATHOLOGY

Fungal Effectors and Plant Susceptibility

(2015) Libera Lo Presti et al.   Annual Review of Plant Biology

The two-speed genomes of filamentous pathogens: waltz with plants

(2015) Suomeng Dong et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Analysis of cytochrome b5 reductase-mediated metabolism in the phytopathogenic fungus Zymoseptoria tritici reveals novel functionalities implicated in virulence

(2015) Mark C. Derbyshire et al.   FUNGAL GENETICS AND BIOLOGY

The impact of Septoria tritici Blotch disease on wheat: An EU perspective

(2015) Helen Fones et al.   FUNGAL GENETICS AND BIOLOGY

Genetics of resistance to Zymoseptoria tritici and applications to wheat breeding

(2015) James K.M. Brown et al.   FUNGAL GENETICS AND BIOLOGY

QTL mapping of fungicide sensitivity reveals novel genes and pleiotropy with melanization in the pathogen Zymoseptoria tritici

(2015) Mark H. Lendenmann et al.   FUNGAL GENETICS AND BIOLOGY

Effector discovery in the fungal wheat pathogenZymoseptoria tritici

(2015) Amir Mirzadi Gohari et al.   MOLECULAR PLANT PATHOLOGY

A recently evolved hexose transporter variant confers resistance to multiple pathogens in wheat

(2015) John W Moore et al.   NATURE GENETICS

Transcriptome and Metabolite Profiling of the Infection Cycle ofZymoseptoria triticion Wheat Reveals a Biphasic Interaction with Plant Immunity Involving Differential Pathogen Chromosomal Contributions and a Variation on the Hemibiotrophic Lifestyle Definition

(2015) Jason J. Rudd et al.   PLANT PHYSIOLOGY

Systematic analyses reveal uniqueness and origin of the CFEM domain in fungi

(2015) Zhen-Na Zhang et al.   Scientific Reports

RNA-seq-Based Gene Annotation and Comparative Genomics of Four Fungal Grass Pathogens in the Genus Zymoseptoria Identify Novel Orphan Genes and Species-Specific Invasions of Transposable Elements

(2015) Jonathan Grandaubert et al.   G3-Genes Genomes Genetics

Rapidly Evolving Genes Are Key Players in Host Specialization and Virulence of the Fungal Wheat Pathogen Zymoseptoria tritici (Mycosphaerella graminicola)

(2015) Stephan Poppe et al.   PLoS Pathogens

The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola

(2015) Braham Dhillon et al.   BMC GENOMICS

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Genetic architecture of naturally occurring quantitative traits in plants: an updated synthesis

(2014) Carlos Alonso-Blanco et al.   CURRENT OPINION IN PLANT BIOLOGY

THE JACK OF ALL TRADES IS MASTER OF NONE: A PATHOGEN'S ABILITY TO INFECT A GREATER NUMBER OF HOST GENOTYPES COMES AT A COST OF DELAYED REPRODUCTION

(2014) Emily Bruns et al.   EVOLUTION

Alt a 1 fromAlternariainteracts with PR5 thaumatin-like proteins

(2014) Cristina Gómez-Casado et al.   FEBS LETTERS

Cryptic Virulence and Avirulence Alleles Revealed by Controlled Sexual Recombination in Pea Aphids

(2014) Sadia Kanvil et al.   GENETICS

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

(2014) Bastian Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Measuring Quantitative Virulence in the Wheat Pathogen Zymoseptoria tritici Using High-Throughput Automated Image Analysis

(2014) Ethan L. Stewart et al.   PHYTOPATHOLOGY

Use of Quantitative Traits to Assess Aggressiveness of Phakopsora pachyrhizi Isolates from Nigeria and the United States

(2014) M. Twizeyimana et al.   PLANT DISEASE

The wheat–Septoria conflict: a new front opening up?

(2014) Aoife O’Driscoll et al.   TRENDS IN PLANT SCIENCE

Quantitative Trait Locus Mapping of Melanization in the Plant Pathogenic Fungus Zymoseptoria tritici

(2014) Mark H. Lendenmann et al.   G3-Genes Genomes Genetics

IPM Strategies and Their Dilemmas Including an Introduction to www.eurowheat.org

(2014) Lise Nistrup Jørgensen et al.   Journal of Integrative Agriculture

An Immunity-Triggering Effector from the Barley Smut Fungus Ustilago hordei Resides in an Ustilaginaceae-Specific Cluster Bearing Signs of Transposable Element-Assisted Evolution

(2014) Shawkat Ali et al.   PLoS Pathogens

Local adaptation and evolutionary potential along a temperature gradient in the fungal pathogenRhynchosporium commune

(2013) Tryggvi S. Stefansson et al.   Evolutionary Applications

Molecular characterization and functional analyses ofZtWor1, a transcriptional regulator of the fungal wheat pathogenZymoseptoria tritici

(2013) Amir Mirzadi Gohari et al.   MOLECULAR PLANT PATHOLOGY

QTL mapping in outbred populations: successes and challenges

(2013) Leah C. Solberg Woods   PHYSIOLOGICAL GENOMICS

Assessment of quantitative traits of aggressiveness inMycosphaerella graminicolaon adult wheat plants

(2013) F. Suffert et al.   PLANT PATHOLOGY

Breakage-fusion-bridge Cycles and Large Insertions Contribute to the Rapid Evolution of Accessory Chromosomes in a Fungal Pathogen

(2013) Daniel Croll et al.   PLoS Genetics

Variation and Selection of Quantitative Traits in Plant Pathogens

(2012) Christian Lannou   Annual Review of Phytopathology

Genetic linkage mapping in fungi: current state, applications, and future trends

(2012) Marie Foulongne-Oriol   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Alternaria alternata allergen Alt a 1: A unique β-barrel protein dimer found exclusively in fungi

(2012) Maksymilian Chruszcz et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The many faces of pleiotropy

(2012) Annalise B. Paaby et al.   TRENDS IN GENETICS

Using Drosophila melanogaster as a Model for Genotoxic Chemical Mutational Studies with a New Program, SnpSift

(2012) Pablo Cingolani et al.   Frontiers in Genetics

Mycosphaerella graminicola: from genomics to disease control

(2011) ELIZABETH S. ORTON et al.   MOLECULAR PLANT PATHOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Analysis of Two in Planta Expressed LysM Effector Homologs from the Fungus Mycosphaerella graminicola Reveals Novel Functional Properties and Varying Contributions to Virulence on Wheat

(2011) R. Marshall et al.   PLANT PHYSIOLOGY

Virulence Evolution of the Human Pathogen Neisseria meningitidis by Recombination in the Core and Accessory Genome

(2011) Biju Joseph et al.   PLoS One

Phenomics – technologies to relieve the phenotyping bottleneck

(2011) Robert T. Furbank et al.   TRENDS IN PLANT SCIENCE

Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis

(2011) Stephen B. Goodwin et al.   PLoS Genetics

Quantitative Disease Resistance and Quantitative Resistance Loci in Breeding

(2010) Dina A. St.Clair   Annual Review of Phytopathology

R/qtl: high-throughput multiple QTL mapping: Fig. 1.

(2010) Danny Arends et al.   BIOINFORMATICS

Involvement of transposon-like elements in penicillin gene cluster regulation

(2010) Mona Shaaban et al.   FUNGAL GENETICS AND BIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

(2010) Li-Jun Ma et al.   NATURE

Sexual Recombinants Make a Significant Contribution to Epidemics Caused by the Wheat PathogenPhaeosphaeria nodorum

(2010) Rubik J. Sommerhalder et al.   PHYTOPATHOLOGY

Simple means to improve the interpretability of regression coefficients

(2010) Holger Schielzeth   Methods in Ecology and Evolution

Whole-Genome and Chromosome Evolution Associated with Host Adaptation and Speciation of the Wheat Pathogen Mycosphaerella graminicola

(2010) Eva H. Stukenbrock et al.   PLoS Genetics

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Horizontal Chromosome Transfer, a Mechanism for the Evolution and Differentiation of a Plant-Pathogenic Fungus

(2009) Yasunori Akagi et al.   EUKARYOTIC CELL

Gα and Gβ Proteins Regulate the Cyclic AMP Pathway That Is Required for Development and Pathogenicity of the PhytopathogenMycosphaerella graminicola

(2009) Rahim Mehrabi et al.   EUKARYOTIC CELL

MAP kinase signalling pathway components and targets conserved between the distantly related plant pathogenic fungi Mycosphaerella graminicola and Magnaporthe grisea

(2009) Bastian Kramer et al.   FUNGAL GENETICS AND BIOLOGY

Population Genetics of Fungal and Oomycete Effectors Involved in Gene-for-Gene Interactions

(2009) Eva H. Stukenbrock et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Aggressiveness Components and Adaptation to a Host Cultivar in Wheat Leaf Rust

(2009) Bénédicte Pariaud et al.   PHYTOPATHOLOGY

Meiosis Drives Extraordinary Genome Plasticity in the Haploid Fungal Plant Pathogen Mycosphaerella graminicola

(2009) Alexander H. J. Wittenberg et al.   PLoS One

A Putative ABC Transporter Confers Durable Resistance to Multiple Fungal Pathogens in Wheat

(2009) S. G. Krattinger et al.   SCIENCE

Efflux in Fungi: La Pièce de Résistance

(2009) Jeffrey J. Coleman et al.   PLoS Pathogens

Human QTL linkage mapping

(2008) Laura Almasy et al.   GENETICA

The Basic Reproduction Number of Plant Pathogens: Matrix Approaches to Complex Dynamics

(2008) F. van den Bosch et al.   PHYTOPATHOLOGY