Differential dynamics of microbial community networks help identify microorganisms interacting with residue-borne pathogens: the case of Zymoseptoria tritici in wheat

Combined Metabarcoding and Co-occurrence Network Analysis to Profile the Bacterial, Fungal and Fusarium Communities and Their Interactions in Maize Stalks

(2019) José Francisco Cobo-Díaz et al.   Frontiers in Microbiology

Temporal dynamics of bacterial and fungal communities during the infection of Brassica rapa roots by the protist Plasmodiophora brassicae

(2019) Lionel Lebreton et al.   PLoS One

Crop Residues in Wheat-Oilseed Rape Rotation System: a Pivotal, Shifting Platform for Microbial Meetings

(2019) Lydie Kerdraon et al.   MICROBIAL ECOLOGY

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

Disease-induced assemblage of a plant-beneficial bacterial consortium

(2018) Roeland L. Berendsen et al.   ISME Journal

Sexual Reproduction in the Fungal Foliar Pathogen Zymoseptoria tritici Is Driven by Antagonistic Density Dependence Mechanisms

(2018) Frédéric Suffert et al.   MICROBIAL ECOLOGY

Fungi stabilize connectivity in the lung and skin microbial ecosystems

(2018) Laura Tipton et al.   Microbiome

Can Plant Microbiome Studies Lead to Effective Biocontrol of Plant Diseases?

(2017) Jeffrey G. Ellis   MOLECULAR PLANT-MICROBE INTERACTIONS

Disease Suppressive Soils: New Insights from the Soil Microbiome

(2017) Daniel Schlatter et al.   PHYTOPATHOLOGY

Microbial Interactions in the Phyllosphere Increase Plant Performance under Herbivore Biotic Stress

(2017) Muhammad Saleem et al.   Frontiers in Microbiology

Fungal communities in organically grown winter wheat affected by plant organ and development stage

(2016) Magdalena Grudzinska-Sterno et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Deciphering the Pathobiome: Intra- and Interkingdom Interactions Involving the Pathogen Erysiphe alphitoides

(2016) Boris Jakuschkin et al.   MICROBIAL ECOLOGY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

The microbiome of the leaf surface of Arabidopsis protects against a fungal pathogen

(2016) Unyarat Ritpitakphong et al.   NEW PHYTOLOGIST

Microbiome Networks: A Systems Framework for Identifying Candidate Microbial Assemblages for Disease Management

(2016) R. Poudel et al.   PHYTOPATHOLOGY

Evidence of Selection for Fungicide Resistance in Zymoseptoria tritici Populations on Wheat in Western Oregon

(2016) Laura E. Hayes et al.   PLANT DISEASE

Selection and characterization of Argentine isolates of Trichoderma harzianum for effective biocontrol of Septoria leaf blotch of wheat

(2016) Marina C. Stocco et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Reduction of Growth and Reproduction of the Biotrophic Fungus Blumeria graminis in the Presence of a Necrotrophic Pathogen

(2016) Elizabeth S. Orton et al.   Frontiers in Plant Science

The impact of Septoria tritici Blotch disease on wheat: An EU perspective

(2015) Helen Fones et al.   FUNGAL GENETICS AND BIOLOGY

The potential of antagonistic fungi for control ofFusarium graminearumandFusarium crookwellensevaries depending on the experimental approach

(2015) A. Schöneberg et al.   JOURNAL OF APPLIED MICROBIOLOGY

The plant microbiome explored: implications for experimental botany

(2015) Gabriele Berg et al.   JOURNAL OF EXPERIMENTAL BOTANY

Is the onset of septoria tritici blotch epidemics related to the local pool of ascospores?

(2015) D. Morais et al.   PLANT PATHOLOGY

Emergence and early evolution of fungicide resistance in North American populations ofZymoseptoria tritici

(2015) L. K. Estep et al.   PLANT PATHOLOGY

Sparse and Compositionally Robust Inference of Microbial Ecological Networks

(2015) Zachary D. Kurtz et al.   PLoS Computational Biology

Secondary metabolites in fungus-plant interactions

(2015) Tünde Pusztahelyi et al.   Frontiers in Plant Science

Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics

(2014) Muriel Vayssier-Taussat et al.   Frontiers in Cellular and Infection Microbiology

Deciphering microbial interactions and detecting keystone species with co-occurrence networks

(2014) David Berry et al.   Frontiers in Microbiology

Stimulation of Different Functional Groups of Bacteria by Various Plant Residues as a Driver of Soil Priming Effect

(2013) Noémie Pascault et al.   ECOSYSTEMS

First Report of Resistance to QoI Fungicides in North American Populations of Zymoseptoria tritici, Causal Agent of Septoria Tritici Blotch of Wheat

(2013) L. K. Estep et al.   PLANT DISEASE

Assessment of quantitative traits of aggressiveness inMycosphaerella graminicolaon adult wheat plants

(2013) F. Suffert et al.   PLANT PATHOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The human microbiome: at the interface of health and disease

(2012) Ilseung Cho et al.   NATURE REVIEWS GENETICS

Biocontrol and population dynamics ofFusariumspp. on wheat stubble in Argentina

(2012) J. M. Palazzini et al.   PLANT PATHOLOGY

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Zymoseptoria gen. nov.: a new genus to accommodate Septoria-like species occurring on graminicolous hosts

(2011) W. Quaedvlieg et al.   PERSOONIA

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Managing the ecology of foliar pathogens: ecological tolerance in crops

(2010) A.C. Newton et al.   ANNALS OF APPLIED BIOLOGY

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Early stages of septoria tritici blotch epidemics of winter wheat: build-up, overseasoning, and release of primary inoculum

(2010) F. Suffert et al.   PLANT PATHOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

Biological control of Septoria tritici blotch on wheat by Trichoderma spp. under field conditions in Argentina

(2008) Analía Edith Perelló et al.   BIOCONTROL

Bacillus megaterium shows potential for the biocontrol of septoria tritici blotch of wheat

(2008) Steven Kildea et al.   BIOLOGICAL CONTROL

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Are azole fungicides losing ground against Septoria wheat disease? Resistance mechanisms inMycosphaerella graminicola

(2008) Hans J Cools et al.   PEST MANAGEMENT SCIENCE

Antimicrobial Activity of Pyrrocidines fromAcremonium zeaeAgainst Endophytes and Pathogens of Maize

(2008) Donald T. Wicklow et al.   PHYTOPATHOLOGY

Plant-driven selection of microbes

(2008) Anton Hartmann et al.   PLANT AND SOIL

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA