Combined Metabarcoding and Co-occurrence Network Analysis to Profile the Bacterial, Fungal and Fusarium Communities and Their Interactions in Maize Stalks

Growth promotion and root colonisation in pepper plants by phosphate-solubilising Chryseobacterium sp. strain ISE14 that suppresses Phytophthora blight

(2018) M.K. Sang et al.   ANNALS OF APPLIED BIOLOGY

Comparative Microbiome Analysis of a Fusarium Wilt Suppressive Soil and a Fusarium Wilt Conducive Soil From the Châteaurenard Region

(2018) Katarzyna Siegel-Hertz et al.   Frontiers in Microbiology

Maize Endophytic Bacterial Diversity as Affected by Soil Cultivation History

(2018) David Correa-Galeote et al.   Frontiers in Microbiology

Mycobiota of maize seeds revealed by rDNA-ITS sequence analysis of samples with varying storage times

(2018) Hui-Qin Xing et al.   MicrobiologyOpen

Assessing Performance of Spore Samplers in Monitoring Aeromycobiota and Fungal Plant Pathogen Diversity in Canada

(2018) Wen Chen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of tillage and static abiotic soil properties on microbial diversity

(2018) Fabienne Legrand et al.   APPLIED SOIL ECOLOGY

Rhizobium japonicum as a biocontrol agent of soybean root rot disease caused by Fusarium solani and Macrophomina phaseolina

(2018) R.A. Al-Ani et al.   PLANT PROTECTION SCIENCE

Agricultural factors affecting Fusarium communities in wheat kernels

(2017) Ida Karlsson et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Identification, purification, and expression patterns of chitinase from psychrotolerant Pedobacter sp. PR-M6 and antifungal activity in vitro

(2017) Yong-Su Song et al.   MICROBIAL PATHOGENESIS

Screening of wheat endophytes as biological control agents against Fusarium head blight using two different in vitro tests

(2017) Morgane Comby et al.   MICROBIOLOGICAL RESEARCH

Plant diversity and plant identity influence Fusarium communities in soil

(2017) Nicholas LeBlanc et al.   MYCOLOGIA

Simplified and representative bacterial community of maize roots

(2017) Ben Niu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Inducing the rhizosphere microbiome by biofertilizer application to suppress banana Fusarium wilt disease

(2017) Lin Fu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Distinct roles for soil fungal and bacterial communities associated with the suppression of vanilla Fusarium wilt disease

(2017) Wu Xiong et al.   SOIL BIOLOGY & BIOCHEMISTRY

Functional Characterization of Endophytic Fungal Community Associated with Oryza sativa L. and Zea mays L.

(2017) Momota Potshangbam et al.   Frontiers in Microbiology

Comparative analysis of bacterial community structure in the rhizosphere of maize by high-throughput pyrosequencing

(2017) Yi Yang et al.   PLoS One

Previous crop and rotation history effects on maize seedling health and associated rhizosphere microbiome

(2017) Maria-Soledad Benitez et al.   Scientific Reports

Composition of endophytic fungal community associated with leaves of maize cultivated in south Brazilian field

(2016) Vivian J. Szilagyi-Zecchin et al.   ACTA MICROBIOLOGICA ET IMMUNOLOGICA HUNGARICA

In vitro competition between Fusarium graminearum and Epicoccum nigrum on media and wheat grains

(2016) Brita Dahl Jensen et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Relationship betweenFusariumspp. diversity and mycotoxin contents of mature grains in southern Belgium

(2016) Pierre Hellin et al.   Food Additives and Contaminants Part A-Chemistry Analysis Control Exposure & Risk Assessment

Emergence of Antagonism Against the Pathogenic FungusFusarium oxysporumby Interplay Among Non-Antagonistic Bacteria in a Hydroponics Using Multiple Parallel Mineralization

(2016) Kazuki Fujiwara et al.   JOURNAL OF PHYTOPATHOLOGY

The Bacterial Community Structure and Dynamics of Carbon and Nitrogen when Maize (Zea mays L.) and Its Neutral Detergent Fibre Were Added to Soil from Zimbabwe with Contrasting Management Practices

(2016) Magali De la Cruz-Barrón et al.   MICROBIAL ECOLOGY

Wheat seeds harbour bacterial endophytes with potential as plant growth promoters and biocontrol agents of Fusarium graminearum

(2016) Silvana Díaz Herrera et al.   MICROBIOLOGICAL RESEARCH

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fusarium Toxins in Cereals: Occurrence, Legislation, Factors Promoting the Appearance and Their Management

(2016) Davide Ferrigo et al.   MOLECULES

Bacterial Communities in the Rhizosphere of Amilaceous Maize (Zea mays L.) as Assessed by Pyrosequencing

(2016) David Correa-Galeote et al.   Frontiers in Plant Science

Diversity ofFusariumspecies isolated from UK forage maize and the population structure ofF. graminearumfrom maize and wheat

(2016) Ryan Basler   PeerJ

Zonal Soil Type Determines Soil Microbial Responses to Maize Cropping and Fertilization

(2016) Mengxin Zhao et al.   mSystems

Mutual Exclusion between Fungal Species of the Fusarium Head Blight Complex in a Wheat Spike

(2015) Dorothée Siou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genus-Specific Primers for Study of Fusarium Communities in Field Samples

(2015) Ida Karlsson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phytobeneficial Properties of Bacteria Isolated from the Rhizosphere of Maize in Southwestern Nigerian Soils

(2015) M. A. Abiala et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial community structure in maize stubble-amended soils with different moisture levels estimated by bar-coded pyrosequencing

(2015) Lin Chen et al.   APPLIED SOIL ECOLOGY

Analysis of microbial taxonomical groups present in maize stalks suppressive to colonization by toxigenic Fusarium spp.: A strategy for the identification of potential antagonists

(2015) Jürgen Köhl et al.   BIOLOGICAL CONTROL

Reduction of Fusarium head blight using prothioconazole and prothioconazole-tolerant variants of the Fusarium head blight antagonist Cryptococcus flavescens OH 182.9

(2015) David A. Schisler et al.   BIOLOGICAL CONTROL

Microbial inoculants for the biocontrol of Fusarium spp. in durum wheat

(2015) Loredana Baffoni et al.   BMC MICROBIOLOGY

Polymerase matters: non-proofreading enzymes inflate fungal community richness estimates by up to 15 %

(2015) Alena K. Oliver et al.   Fungal Ecology

Scraping the bottom of the barrel: are rare high throughput sequences artifacts?

(2015) Shawn P. Brown et al.   Fungal Ecology

The potential of antagonistic fungi for control ofFusarium graminearumandFusarium crookwellensevaries depending on the experimental approach

(2015) A. Schöneberg et al.   JOURNAL OF APPLIED MICROBIOLOGY

Fusarium diversity in soil using a specific molecular approach and a cultural approach

(2015) Véronique Edel-Hermann et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Antagonistic Mechanism of Iturin A and Plipastatin A from Bacillus amyloliquefaciens S76-3 from Wheat Spikes against Fusarium graminearum

(2015) An-Dong Gong et al.   PLoS One

A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes

(2015) Craig W. Herbold et al.   Frontiers in Microbiology

Paenibacillus polymyxa A26 Sfp-type PPTase inactivation limits bacterial antagonism against Fusarium graminearum but not of F. culmorum in kernel assay

(2015) Islam A. Abd El Daim et al.   Frontiers in Plant Science

Bacterial endophytes from wild maize suppress Fusarium graminearum in modern maize and inhibit mycotoxin accumulation

(2015) Walaa K. Mousa et al.   Frontiers in Plant Science

qgraph: Network Visualizations of Relationships in Psychometric Data

(2015) Sacha Epskamp et al.   Journal of Statistical Software

Effect of Environmental Factors on Fusarium Species and Associated Mycotoxins in Maize Grain Grown in Poland

(2015) Elżbieta Czembor et al.   PLoS One

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Fungal communities in wheat grain show significant co-existence patterns among species

(2014) M. Nicolaisen et al.   Fungal Ecology

Non-pathogenic rhizosphere bacteria belonging to the generaRhizorhapisandSphingobiumprovide specific control of lettuce corky root disease caused by species of the same bacterial genera

(2014) A. H. C. van Bruggen et al.   PLANT PATHOLOGY

Role of Bacterial Communities in the Natural Suppression of Rhizoctonia solani Bare Patch Disease of Wheat (Triticum aestivum L.)

(2013) Chuntao Yin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Assessing the Relative Effects of Geographic Location and Soil Type on Microbial Communities Associated with Straw Decomposition

(2013) Bo Sun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Influence of temperature on infection, growth, and mycotoxin production by Fusarium langsethiae and F. sporotrichioides in durum wheat

(2013) L. Nazari et al.   FOOD MICROBIOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamics of the bacterial community structure in the rhizosphere of a maize cultivar

(2013) Xiangzhen Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

(2013) Johan Bengtsson-Palme et al.   Methods in Ecology and Evolution

Iturin Levels on Wheat Spikes Linked to Biological Control of Fusarium Head Blight byBacillus amyloliquefaciens

(2012) J. M. Crane et al.   PHYTOPATHOLOGY

Biological control of botrytis bunch rot in organic wine grapes with the yeast antagonistCandida sakeCPA-1

(2012) C. Calvo-Garrido et al.   PLANT PATHOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Biodiversity of Fusarium species in ears and stalks of maize plants in Belgium

(2011) Jonathan Scauflaire et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Fusarium species complex and mycotoxins in grain maize from maize hybrid trials and from grower’s fields

(2011) B. Dorn et al.   JOURNAL OF APPLIED MICROBIOLOGY

Fusarium Head Blight of Cereals in Denmark: Species Complex and Related Mycotoxins

(2011) L. K. Nielsen et al.   PHYTOPATHOLOGY

Metschnikowia andauensis as a new biocontrol agent of fruit postharvest diseases

(2011) Teresa Manso et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Acremonium phylogenetic overview and revision of Gliomastix, Sarocladium, and Trichothecium

(2011) R.C. Summerbell et al.   STUDIES IN MYCOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Plant genotype strongly modifies the structure and growth of maize rhizosphere microbial communities

(2010) Manuel Aira et al.   SOIL BIOLOGY & BIOCHEMISTRY

Population dynamics ofEpicoccum nigrum, a biocontrol agent against brown rot in stone fruit

(2009) A. De Cal et al.   JOURNAL OF APPLIED MICROBIOLOGY

Concurrent selection for microbial suppression ofFusarium graminearum, Fusarium head blight and deoxynivalenol in wheat

(2009) J. He et al.   JOURNAL OF APPLIED MICROBIOLOGY

Fungal-Fungal Associations Affect the Assembly of Endophyte Communities in Maize (Zea mays)

(2009) Jean J. Pan et al.   MICROBIAL ECOLOGY

Interactions of temperature and water potential in displacement of Fusarium pseudograminearum from cereal residues by fungal antagonists

(2008) Dalvinder P. Singh et al.   BIOLOGICAL CONTROL

Articulosporasp. Produces Art1, an Inhibitor of Bacterial Histidine Kinase

(2008) Hirosuke SUGAHARA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Antimicrobial Activity of Pyrrocidines fromAcremonium zeaeAgainst Endophytes and Pathogens of Maize

(2008) Donald T. Wicklow et al.   PHYTOPATHOLOGY

Impact of agronomic practices on populations of Fusarium and other fungi in cereal and noncereal crop residues on the Canadian Prairies

(2008) M FERNANDEZ et al.   SOIL & TILLAGE RESEARCH

Effects of maize residues on the Fusarium spp. infection and deoxynivalenol (DON) contamination of wheat grain

(2007) Andrea Maiorano et al.   CROP PROTECTION

Relationship Between the Fungal Complex Causing Fusarium Head Blight of Wheat and Environmental Conditions

(2007) X.-M. Xu et al.   PHYTOPATHOLOGY