Seasonal dynamics of microbial diversity in the rhizosphere of Ulmus pumila L. var. sabulosa in a steppe desert area of Northern China

Evaluation of the ribosomal DNA internal transcribed spacer (ITS), specifically ITS1 and ITS2, for the analysis of fungal diversity by deep sequencing

(2018) Rui-Heng Yang et al.   PLoS One

Phosphorus and Nitrogen Drive the Seasonal Dynamics of Bacterial Communities in Pinus Forest Rhizospheric Soil of the Qinling Mountains

(2018) Hai H. Wang et al.   Frontiers in Microbiology

A Horizon Scan of Emerging Issues for Global Conservation in 2019

(2018) William J. Sutherland et al.   TRENDS IN ECOLOGY & EVOLUTION

Metagenomic analysis exploring taxonomic and functional diversity of soil microbial communities in Chilean vineyards and surrounding native forests

(2017) Luis E. Castañeda et al.   PeerJ

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Unearthing microbial diversity of Taxus rhizosphere via MiSeq high-throughput amplicon sequencing and isolate characterization

(2016) Da Cheng Hao et al.   Scientific Reports

Comparison of Methods for Estimating Fractional Cover of Photosynthetic and Non-Photosynthetic Vegetation in the Otindag Sandy Land Using GF-1 Wide-Field View Data

(2016) Xiaosong Li et al.   Remote Sensing

Contrasting effects of urban habitat complexity on metabolic functional diversity and composition of litter and soil bacterial communities

(2016) Alessandro Ossola et al.   URBAN ECOSYSTEMS

Metagenomic analysis reveals microbial functional redundancies and specificities in a soil under different tillage and crop-management regimes

(2015) Renata Carolini Souza et al.   APPLIED SOIL ECOLOGY

The bacterial community inhabiting temperate deciduous forests is vertically stratified and undergoes seasonal dynamics

(2015) Rubén López-Mondéjar et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil carbon content drives the biogeographical distribution of fungal communities in the black soil zone of northeast China

(2015) Junjie Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

The Spatial Pattern and Interactions of Woody Plants on the Temperate Savanna of Inner Mongolia, China: The Effects of Alternating Seasonal Grazing-Mowing Regimes

(2015) Xiao Wang et al.   PLoS One

Taxonomical and functional microbial community selection in soybean rhizosphere

(2014) Lucas W Mendes et al.   ISME Journal

Bacterial Diversity in the Rhizosphere of Cucumbers Grown in Soils Covering a Wide Range of Cucumber Cropping Histories and Environmental Conditions

(2014) Yongqiang Tian et al.   MICROBIAL ECOLOGY

Composition and activity of rhizosphere microbial communities associated with healthy and diseased greenhouse tomatoes

(2014) Jian-Gang Li et al.   PLANT AND SOIL

Exercise Prevents Weight Gain and Alters the Gut Microbiota in a Mouse Model of High Fat Diet-Induced Obesity

(2014) Christian C. Evans et al.   PLoS One

High throughput sequencing analysis of biogeographical distribution of bacterial communities in the black soils of northeast China

(2014) Junjie Liu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Pyrosequencing evidences the impact of cropping on soil bacterial and fungal diversity in Laos tropical grassland

(2013) Pascal Lienhard et al.   Agronomy for Sustainable Development

Relationships of native trees with grasses in a temperate, semi-arid sandy ecosystem of northern China

(2013) Hongxiao Yang et al.   APPLIED VEGETATION SCIENCE

Vegetation and community changes of elm (Ulmus pumila) woodlands in Northeastern China in 1983–2011

(2013) Li Liu et al.   Chinese Geographical Science

Changes in rhizosphere soil microbial communities in a continuously monocropped cucumber (Cucumis sativus L.) system

(2013) Xingang Zhou et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Environmental changes in Hunshandake (Otindag) sandy land revealed by optical dating and multi-proxy study of dune sands

(2013) Zhijun Gong et al.   JOURNAL OF ASIAN EARTH SCIENCES

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seasonal differences in tree species' influence on soil microbial communities

(2013) Carolin Thoms et al.   SOIL BIOLOGY & BIOCHEMISTRY

Fungal networks in yield-invigorating and -debilitating soils induced by prolonged potato monoculture

(2013) Lihua Lu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Fungal and Bacterial Communities in the Rhizosphere ofPinus tabulaeformisRelated to the Restoration of Plantations and Natural Secondary Forests in the Loess Plateau, Northwest China

(2013) Hong-Xia Yu et al.   TheScientificWorldJOURNAL

Changes in water use with growth in Ulmus pumila in semiarid sandy land of northern China

(2013) Hua Su et al.   TREES-STRUCTURE AND FUNCTION

Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers

(2012) Martina Štursová et al.   FEMS MICROBIOLOGY ECOLOGY

Bacterial spore structures and their protective role in biocide resistance

(2012) M.J. Leggett et al.   JOURNAL OF APPLIED MICROBIOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Soil microbial-root and microbial-rhizosphere processes to increase nitrogen availability and retention in agroecosystems

(2012) Louise E Jackson et al.   Current Opinion in Environmental Sustainability

Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types

(2011) Neil R. Gottel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Soil microbial communities are affected more by land use than seasonal variation in restored grassland and cultivated Mollisols in Northeast China

(2011) Zhenhua Yu et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Pyrosequencing-Based Assessment of Bacterial Community Structure Along Different Management Types in German Forest and Grassland Soils

(2011) Heiko Nacke et al.   PLoS One

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Unraveling plant–microbe interactions: can multi-species transcriptomics help?

(2011) Peer M. Schenk et al.   TRENDS IN BIOTECHNOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

A new method for non-parametric multivariate analysis of variance

(2010) MARTI J. ANDERSON   AUSTRAL ECOLOGY

Trees in the desert: Reproduction and genetic structure of fragmented Ulmus pumila forests in Mongolian drylands

(2010) Karsten Wesche et al.   FLORA

Drought-resistant fungi control soil organic matter decomposition and its response to temperature

(2010) J.C. YUSTE et al.   GLOBAL CHANGE BIOLOGY

Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction

(2010) Robert M Morris et al.   ISME Journal

Seasonality and resource availability control bacterial and archaeal communities in soils of a temperate beech forest

(2010) Frank Rasche et al.   ISME Journal

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Structural and functional diversity of soil bacterial and fungal communities following woody plant encroachment in the southern Great Plains

(2010) Emily B. Hollister et al.   SOIL BIOLOGY & BIOCHEMISTRY

Pathogenesis, parasitism and mutualism in the trophic space of microbe–plant interactions

(2010) Adrian C. Newton et al.   TRENDS IN MICROBIOLOGY

Dune mobility and aridity at the desert margin of northern China at a time of peak monsoon strength

(2009) J.A. Mason et al.   GEOLOGY

Abundance, composition, diversity and novelty of soil Proteobacteria

(2009) Anne M Spain et al.   ISME Journal

Leaf-level plasticity of Salix gordejevii in fixed dunes compared with lowlands in Hunshandake Sandland, North China

(2009) Hua Su et al.   JOURNAL OF PLANT RESEARCH

The rhizosphere zoo: An overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors

(2009) M. Buée et al.   PLANT AND SOIL

Three decades of soil microbial biomass studies in Brazilian ecosystems: Lessons learned about soil quality and indications for improving sustainability

(2009) Glaciela Kaschuk et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effects of an intravenous endotoxin challenge on glucose and insulin dynamics in horses

(2008) Ferenc Tóth et al.   AMERICAN JOURNAL OF VETERINARY RESEARCH

Stress tolerance in plants via habitat-adapted symbiosis

(2008) Rusty J Rodriguez et al.   ISME Journal

A versatile oxygenator and perfusion system for magnetic resonance studies

(2004) Michael P. Gamcsik et al.   BIOTECHNOLOGY AND BIOENGINEERING