An examination of data from the American Gut Project reveals that the dominance of the genus Bifidobacterium is associated with the diversity and robustness of the gut microbiota

A theoretical framework for controlling complex microbial communities

(2019) Marco Tulio Angulo et al.   Nature Communications

Keystone taxa as drivers of microbiome structure and functioning

(2018) Samiran Banerjee et al.   NATURE REVIEWS MICROBIOLOGY

Assembly and ecological function of the root microbiome across angiosperm plant species

(2018) Connor R. Fitzpatrick et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Diversity and Co-occurrence Patterns of Soil Bacterial and Fungal Communities in Seven Intercropping Systems

(2018) Sen Li et al.   Frontiers in Microbiology

Depicting the composition of gut microbiota in a population with varied ethnic origins but shared geography

(2018) Mélanie Deschasaux et al.   NATURE MEDICINE

Temporal development of the gut microbiome in early childhood from the TEDDY study

(2018) Christopher J. Stewart et al.   NATURE

Lactate- and acetate-based cross-feeding interactions between selected strains of lactobacilli, bifidobacteria and colon bacteria in the presence of inulin-type fructans

(2017) Frédéric Moens et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Towards standards for human fecal sample processing in metagenomic studies

(2017) Paul I Costea et al.   NATURE BIOTECHNOLOGY

Probiotics and Child Care Absence Due to Infections: A Randomized Controlled Trial

(2017) Rikke Pilmann Laursen et al.   PEDIATRICS

Diet in irritable bowel syndrome: What to recommend, not what to forbid to patients!

(2017) Anamaria Cozma-Petruţ et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Oxalobacter formigenes-associated host features and microbial community structures examined using the American Gut Project

(2017) Menghan Liu et al.   Microbiome

Probiotics in Asthma and Allergy Prevention

(2017) Maurizio Mennini et al.   Frontiers in Pediatrics

Correcting for Microbial Blooms in Fecal Samples during Room-Temperature Shipping

(2017) Amnon Amir et al.   mSystems

Fermented Milk Containing Lactobacillus casei Strain Shirota Preserves the Diversity of the Gut Microbiota and Relieves Abdominal Dysfunction in Healthy Medical Students Exposed to Academic Stress

(2016) Akito Kato-Kataoka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Are We Really Vastly Outnumbered? Revisiting the Ratio of Bacterial to Host Cells in Humans

(2016) Ron Sender et al.   CELL

Efficacy of double-coated probiotics for irritable bowel syndrome: a randomized double-blind controlled trial

(2016) Kyungsun Han et al.   JOURNAL OF GASTROENTEROLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Locally rare species influence grassland ecosystem multifunctionality

(2016) Santiago Soliveres et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Population-level analysis of gut microbiome variation

(2016) Gwen Falony et al.   SCIENCE

Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet

(2016) Douglas Mahana et al.   Genome Medicine

Alterations in fecal microbiota composition by probiotic supplementation in healthy adults: a systematic review of randomized controlled trials

(2016) Nadja B. Kristensen et al.   Genome Medicine

Association of Early Exposure of Probiotics and Islet Autoimmunity in the TEDDY Study

(2016) Ulla Uusitalo et al.   JAMA Pediatrics

Modulating the Gut Micro-Environment in the Treatment of Intestinal Parasites

(2016) Luis Vitetta et al.   Journal of Clinical Medicine

Probiotic legacy effects on gut microbial assembly in tilapia larvae

(2016) Christos Giatsis et al.   Scientific Reports

Evaluation of the probiotic properties of new Lactobacillus and Bifidobacterium strains and their in vitro effect

(2015) I. Presti et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Sparse and Compositionally Robust Inference of Microbial Ecological Networks

(2015) Zachary D. Kurtz et al.   PLoS Computational Biology

SynbioticLactobacillus acidophilusNCFM and cellobiose does not affect human gut bacterial diversity but increases abundance of lactobacilli, bifidobacteria and branched-chain fatty acids: a randomized, double-blinded cross-over trial

(2014) Gabriella C. van Zanten et al.   FEMS MICROBIOLOGY ECOLOGY

Impact of lifestyle on the gut microbiota of healthy infants and their mothers - the ALADDIN birth cohort

(2014) Helena M. Hesla et al.   FEMS MICROBIOLOGY ECOLOGY

An integrated catalog of reference genes in the human gut microbiome

(2014) Junhua Li et al.   NATURE BIOTECHNOLOGY

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

(2014) H Bjørn Nielsen et al.   NATURE BIOTECHNOLOGY

Revealing the Bacterial Butyrate Synthesis Pathways by Analyzing (Meta)genomic Data

(2014) M. Vital et al.   mBio

Richness of human gut microbiome correlates with metabolic markers

(2013) Emmanuelle Le Chatelier et al.   NATURE

Attack Robustness and Centrality of Complex Networks

(2013) Swami Iyer et al.   PLoS One

Probiotic Mechanisms of Action

(2012) Miriam Bermudez-Brito et al.   ANNALS OF NUTRITION AND METABOLISM

Gut microbiome composition is linked to whole grain-induced immunological improvements

(2012) Inés Martínez et al.   ISME Journal

A framework for human microbiome research

(2012)   NATURE

Gut microbiota composition correlates with diet and health in the elderly

(2012) Marcus J. Claesson et al.   NATURE

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Functional interactions between the gut microbiota and host metabolism

(2012) Valentina Tremaroli et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Health benefits of probiotics: are mixtures more effective than single strains?

(2011) C. M. C. Chapman et al.   EUROPEAN JOURNAL OF NUTRITION

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Estimating overall exposure effects for zero-inflated regression models with application to dental caries

(2011) Jeffrey M Albert et al.   STATISTICAL METHODS IN MEDICAL RESEARCH

Natural Connectivity of Complex Networks

(2010) Wu Jun et al.   CHINESE PHYSICS LETTERS

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Probiotic therapy to men with incipient arteriosclerosis initiates increased bacterial diversity in colon: A randomized controlled trial

(2009) Caroline Karlsson et al.   ATHEROSCLEROSIS