sRNA Profiling Combined With Gene Function Analysis Reveals a Lack of Evidence for Cross-Kingdom RNAi in the Wheat – Zymoseptoria tritici Pathosystem

Stress and sexual reproduction affect the dynamics of the wheat pathogen effector AvrStb6 and strobilurin resistance

(2018) Gerrit H. J. Kema et al.   NATURE GENETICS

Wheat receptor-kinase-like protein Stb6 controls gene-for-gene resistance to fungal pathogen Zymoseptoria tritici

(2018) Cyrille Saintenac et al.   NATURE GENETICS

A fungal avirulence factor encoded in a highly plastic genomic region triggers partial resistance to septoria tritici blotch

(2018) Lukas Meile et al.   NEW PHYTOLOGIST

Plants send small RNAs in extracellular vesicles to fungal pathogen to silence virulence genes

(2018) Qiang Cai et al.   SCIENCE

Identification and application of exogenous dsRNA confers plant protection against Sclerotinia sclerotiorum and Botrytis cinerea

(2018) Austein G. McLoughlin et al.   Scientific Reports

Dicer-Like Proteins Regulate Sexual Development via the Biogenesis of Perithecium-Specific MicroRNAs in a Plant Pathogenic Fungus Fusarium graminearum

(2018) Wenping Zeng et al.   Frontiers in Microbiology

A role for random, humidity-dependent epiphytic growth prior to invasion of wheat by Zymoseptoria tritici

(2017) Helen N. Fones et al.   FUNGAL GENETICS AND BIOLOGY

A small secreted protein in Zymoseptoria tritici is responsible for avirulence on wheat cultivars carrying the Stb6 resistance gene

(2017) Ziming Zhong et al.   NEW PHYTOLOGIST

RNAi as an emerging approach to control Fusarium head blight disease and mycotoxin contamination in cereals

(2017) Ana Karla Machado et al.   PEST MANAGEMENT SCIENCE

Host-induced gene silencing of an important pathogenicity factor PsCPK1 in Puccinia striiformis f. sp. tritici enhances resistance of wheat to stripe rust

(2017) Tuo Qi et al.   PLANT BIOTECHNOLOGY JOURNAL

miR156-Targeted SBP-Box Transcription Factors Interact with DWARF53 to Regulate TEOSINTE BRANCHED1 and BARREN STALK1 Expression in Bread Wheat

(2017) Jie Liu et al.   PLANT PHYSIOLOGY

A conserved fungal glycosyltransferase facilitates pathogenesis of plants by enabling hyphal growth on solid surfaces

(2017) Robert King et al.   PLoS Pathogens

Host-induced silencing ofFusarium culmorumgenes protects wheat from infection

(2016) Wanxin Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Host-induced gene silencing compromises Verticillium wilt in tomato and Arabidopsis

(2016) Yin Song et al.   MOLECULAR PLANT PATHOLOGY

Apoplastic recognition of multiple candidate effectors from the wheat pathogen Zymoseptoria tritici in the nonhost plant Nicotiana benthamiana

(2016) Graeme J. Kettles et al.   NEW PHYTOLOGIST

An RNAi-Based Control of Fusarium graminearum Infections Through Spraying of Long dsRNAs Involves a Plant Passage and Is Controlled by the Fungal Silencing Machinery

(2016) Aline Koch et al.   PLoS Pathogens

Dissecting the Molecular Interactions between Wheat and the Fungal Pathogen Zymoseptoria tritici

(2016) Graeme J. Kettles et al.   Frontiers in Plant Science

VIGS, HIGS and FIGS: small RNA silencing in the interactions of viruses or filamentous organisms with their plant hosts

(2015) David C Baulcombe   CURRENT OPINION IN PLANT BIOLOGY

Virus induced gene silencing (VIGS) for functional analysis of wheat genes involved in Zymoseptoria tritici susceptibility and resistance

(2015) Wing-Sham Lee et al.   FUNGAL GENETICS AND BIOLOGY

Deregulation of Plant Cell Death Through Disruption of Chloroplast Functionality Affects Asexual Sporulation of Zymoseptoria tritici on Wheat

(2015) Wing-Sham Lee et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Host-induced gene silencing of an essential chitin synthase gene confers durable resistance to Fusarium head blight and seedling blight in wheat

(2015) Wei Cheng et al.   PLANT BIOTECHNOLOGY JOURNAL

Transcriptome and Metabolite Profiling of the Infection Cycle ofZymoseptoria triticion Wheat Reveals a Biphasic Interaction with Plant Immunity Involving Differential Pathogen Chromosomal Contributions and a Variation on the Hemibiotrophic Lifestyle Definition

(2015) Jason J. Rudd et al.   PLANT PHYSIOLOGY

Mining diverse small RNA species in the deep transcriptome

(2015) Kasey C. Vickers et al.   TRENDS IN BIOCHEMICAL SCIENCES

RNA-seq-Based Gene Annotation and Comparative Genomics of Four Fungal Grass Pathogens in the Genus Zymoseptoria Identify Novel Orphan Genes and Species-Specific Invasions of Transposable Elements

(2015) Jonathan Grandaubert et al.   G3-Genes Genomes Genetics

A Large-Scale Functional Analysis of Putative Target Genes of Mating-Type Loci Provides Insight into the Regulation of Sexual Development of the Cereal Pathogen Fusarium graminearum

(2015) Hee-Kyoung Kim et al.   PLoS Genetics

Host-induced post-transcriptional hairpin RNA-mediated gene silencing of vital fungal genes confers efficient resistance against Fusarium wilt in banana

(2014) Siddhesh B. Ghag et al.   PLANT BIOTECHNOLOGY JOURNAL

RNAi function, diversity, and loss in the fungal kingdom

(2013) R. Blake Billmyre et al.   CHROMOSOME RESEARCH

Resistance ofArabidopsis thalianato the green peach aphid,Myzus persicae, involves camalexin and is regulated by microRNAs

(2013) Graeme J. Kettles et al.   NEW PHYTOLOGIST

Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data

(2013) MARC LOHSE et al.   PLANT CELL AND ENVIRONMENT

Host-induced gene silencing of cytochrome P450 lanosterol C14 -demethylase-encoding genes confers strong resistance to Fusarium species

(2013) A. Koch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fungal Small RNAs Suppress Plant Immunity by Hijacking Host RNA Interference Pathways

(2013) Arne Weiberg et al.   SCIENCE

Loss and Retention of RNA Interference in Fungi and Parasites

(2013) Francisco E. Nicolás et al.   PLoS Pathogens

RNA Interference Pathways in Fungi: Mechanisms and Functions

(2012) Shwu-Shin Chang et al.   Annual Review of Microbiology

The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets

(2012) M. B. Stocks et al.   BIOINFORMATICS

The Top 10 fungal pathogens in molecular plant pathology

(2012) RALPH DEAN et al.   MOLECULAR PLANT PATHOLOGY

Streaming fragment assignment for real-time analysis of sequencing experiments

(2012) Adam Roberts et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Barley Stripe Mosaic Virus-Mediated Tools for Investigating Gene Function in Cereal Plants and Their Pathogens: Virus-Induced Gene Silencing, Host-Mediated Gene Silencing, and Virus-Mediated Overexpression of Heterologous Protein

(2012) W.-S. Lee et al.   PLANT PHYSIOLOGY

RNA Interference in Fungi: Pathways, Functions, and Applications

(2011) Yunkun Dang et al.   EUKARYOTIC CELL

Aberrant protein N-glycosylation impacts upon infection-related growth transitions of the haploid plant-pathogenic fungus Mycosphaerella graminicola

(2011) Juliet Motteram et al.   MOLECULAR MICROBIOLOGY

Analysis of Two in Planta Expressed LysM Effector Homologs from the Fungus Mycosphaerella graminicola Reveals Novel Functional Properties and Varying Contributions to Virulence on Wheat

(2011) R. Marshall et al.   PLANT PHYSIOLOGY

A High Throughput Barley Stripe Mosaic Virus Vector for Virus Induced Gene Silencing in Monocots and Dicots

(2011) Cheng Yuan et al.   PLoS One

Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis

(2011) Stephen B. Goodwin et al.   PLoS Genetics

The complex interactions between host immunity and non-biotrophic fungal pathogens of wheat leaves

(2010) Siân Deller et al.   JOURNAL OF PLANT PHYSIOLOGY

New capabilities for Mycosphaerella graminicola research

(2010) JUDITH BOWLER et al.   MOLECULAR PLANT PATHOLOGY

HIGS: Host-Induced Gene Silencing in the Obligate Biotrophic Fungal PathogenBlumeria graminis

(2010) Daniela Nowara et al.   PLANT CELL

The biosynthetic pathways and biological scopes of plant small RNAs

(2010) Franck Vazquez et al.   TRENDS IN PLANT SCIENCE

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Molecular Characterization and Functional Analysis ofMgNLP, the Sole NPP1 Domain–Containing Protein, from the Fungal Wheat Leaf PathogenMycosphaerella graminicola

(2009) Juliet Motteram et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Small silencing RNAs: an expanding universe

(2009) Megha Ghildiyal et al.   NATURE REVIEWS GENETICS

A toolkit for analysing large-scale plant small RNA datasets

(2008) S. Moxon et al.   BIOINFORMATICS

RNA silencing is required for Arabidopsis defence against Verticillium wilt disease

(2008) Ursula Ellendorff et al.   JOURNAL OF EXPERIMENTAL BOTANY

Large-Scale Gene Discovery in the Septoria Tritici Blotch FungusMycosphaerella graminicolawith a Focus on In Planta Expression

(2008) Gert H. J. Kema et al.   MOLECULAR PLANT-MICROBE INTERACTIONS