Persistent Core Populations Shape the Microbiome Throughout the Water Column in the North Pacific Subtropical Gyre
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Title
Persistent Core Populations Shape the Microbiome Throughout the Water Column in the North Pacific Subtropical Gyre
Authors
Keywords
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Journal
Frontiers in Microbiology
Volume 10, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2019-10-01
DOI
10.3389/fmicb.2019.02273
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Note: Only part of the references are listed.- Microbial abundance, activity and population genomic profiling with mOTUs2
- (2019) Alessio Milanese et al. Nature Communications
- Sinking particles promote vertical connectivity in the ocean microbiome
- (2018) Mireia Mestre et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- High resolution time series reveals cohesive but short-lived communities in coastal plankton
- (2018) Antonio M. Martin-Platero et al. Nature Communications
- Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment
- (2018) Jose M. Haro-Moreno et al. Microbiome
- Showcasing the role of seawater in bacteria recruitment and microbiome stability in sponges
- (2018) Marta Turon et al. Scientific Reports
- The enigmatic SAR202 cluster up close: shedding light on a globally distributed dark ocean lineage involved in sulfur cycling
- (2017) Maliheh Mehrshad et al. ISME Journal
- Fundamental differences in diversity and genomic population structure between Atlantic and Pacific Prochlorococcus
- (2017) Nadav Kashtan et al. ISME Journal
- Metabolic evolution and the self-organization of ecosystems
- (2017) Rogier Braakman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Clustal Omega for making accurate alignments of many protein sequences
- (2017) Fabian Sievers et al. PROTEIN SCIENCE
- SAR202 Genomes from the Dark Ocean Predict Pathways for the Oxidation of Recalcitrant Dissolved Organic Matter
- (2017) Zachary Landry et al. mBio
- Environmental drivers of a microbial genomic transition zone in the ocean’s interior
- (2017) Daniel R. Mende et al. Nature Microbiology
- ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
- (2016) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes
- (2016) Daniel R. Mende et al. NUCLEIC ACIDS RESEARCH
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
- (2016) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre
- (2015) Jessica A Bryant et al. ISME Journal
- RefSeq microbial genomes database: new representation and annotation strategy
- (2015) T. Tatusova et al. NUCLEIC ACIDS RESEARCH
- Genomic and proteomic characterization of “CandidatusNitrosopelagicus brevis”: An ammonia-oxidizing archaeon from the open ocean
- (2015) Alyson E. Santoro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structure and function of the global ocean microbiome
- (2015) S. Sunagawa et al. SCIENCE
- Tara Oceans studies plankton at planetary scale
- (2015) P. Bork et al. SCIENCE
- Determinants of community structure in the global plankton interactome
- (2015) G. Lima-Mendez et al. SCIENCE
- Microbial community structure and function on sinking particles in the North Pacific Subtropical Gyre
- (2015) Kristina M. Fontanez et al. Frontiers in Microbiology
- Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years
- (2014) Jacob A Cram et al. ISME Journal
- Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype
- (2014) J Cameron Thrash et al. ISME Journal
- Implications of streamlining theory for microbial ecology
- (2014) Stephen J Giovannoni et al. ISME Journal
- Prochlorococcus: the structure and function of collective diversity
- (2014) Steven J. Biller et al. NATURE REVIEWS MICROBIOLOGY
- Explaining microbial genomic diversity in light of evolutionary ecology
- (2014) Otto X. Cordero et al. NATURE REVIEWS MICROBIOLOGY
- Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus
- (2014) N. Kashtan et al. SCIENCE
- High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences
- (2013) Kevin L Vergin et al. ISME Journal
- Metagenomic species profiling using universal phylogenetic marker genes
- (2013) Shinichi Sunagawa et al. NATURE METHODS
- Accurate and universal delineation of prokaryotic species
- (2013) Daniel R Mende et al. NATURE METHODS
- Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone
- (2012) Jessica A. Bryant et al. ECOLOGY
- Genomic variation landscape of the human gut microbiome
- (2012) Siegfried Schloissnig et al. NATURE
- Seasonality in Ocean Microbial Communities
- (2012) S. J. Giovannoni et al. SCIENCE
- Ecological Populations of Bacteria Act as Socially Cohesive Units of Antibiotic Production and Resistance
- (2012) O. X. Cordero et al. SCIENCE
- Streamlining and Core Genome Conservation among Highly Divergent Members of the SAR11 Clade
- (2012) J. Grote et al. mBio
- Adaptive seeds tame genomic sequence comparison
- (2011) S. M. Kielbasa et al. GENOME RESEARCH
- Defining seasonal marine microbial community dynamics
- (2011) Jack A Gilbert et al. ISME Journal
- Enterotypes of the human gut microbiome
- (2011) Manimozhiyan Arumugam et al. NATURE
- Universally Distributed Single-Copy Genes Indicate a Constant Rate of Horizontal Transfer
- (2011) Christopher J. Creevey et al. PLoS One
- Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment
- (2010) Emiley A. Eloe et al. Environmental Microbiology Reports
- Comparative Metagenomic Analysis of a Microbial Community Residing at a Depth of 4,000 Meters at Station ALOHA in the North Pacific Subtropical Gyre
- (2009) K. T. Konstantinidis et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean
- (2009) Martha Schattenhofer et al. ENVIRONMENTAL MICROBIOLOGY
- The seasonal structure of microbial communities in the Western English Channel
- (2009) Jack A. Gilbert et al. ENVIRONMENTAL MICROBIOLOGY
- Microbial community dynamics in a seasonally anoxic fjord: Saanich Inlet, British Columbia
- (2009) Elena Zaikova et al. ENVIRONMENTAL MICROBIOLOGY
- Explaining microbial population genomics through phage predation
- (2009) Francisco Rodriguez-Valera et al. NATURE REVIEWS MICROBIOLOGY
- Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre
- (2008) Vinh D. Pham et al. ENVIRONMENTAL MICROBIOLOGY
- Abundance and activity of Chloroflexi-type SAR202 bacterioplankton in the meso- and bathypelagic waters of the (sub)tropical Atlantic
- (2008) Marta M. Varela et al. ENVIRONMENTAL MICROBIOLOGY
- Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea
- (2008) Craig A Carlson et al. ISME Journal
- Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton
- (2008) D. E. Hunt et al. SCIENCE
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