Evaluation of Sample Preparation Methods for Fast Proteotyping of Microorganisms by Tandem Mass Spectrometry
Published 2019 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Evaluation of Sample Preparation Methods for Fast Proteotyping of Microorganisms by Tandem Mass Spectrometry
Authors
Keywords
-
Journal
Frontiers in Microbiology
Volume 10, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2019-09-06
DOI
10.3389/fmicb.2019.01985
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Self-Assembled STrap for Global Proteomics and Salivary Biomarker Discovery
- (2019) Yi-Han Lin et al. JOURNAL OF PROTEOME RESEARCH
- Suspension Trapping (S-Trap) Is Compatible with Typical Protein Extraction Buffers and Detergents for Bottom-Up Proteomics
- (2019) Dalia Elinger et al. JOURNAL OF PROTEOME RESEARCH
- Metaproteomics: Much More than Measuring Gene Expression in Microbial Communities
- (2019) Manuel Kleiner mSystems
- Extending the Compatibility of the SP3 Paramagnetic Bead Processing Approach for Proteomics
- (2018) Sophie Moggridge et al. JOURNAL OF PROTEOME RESEARCH
- Comparison of In-Solution, FASP, and S-Trap Based Digestion Methods for Bottom-Up Proteomic Studies
- (2018) Katelyn R. Ludwig et al. JOURNAL OF PROTEOME RESEARCH
- Study of a novel agent for TCA precipitated proteins washing - comprehensive insights into the role of ethanol/HCl on molten globule state by multi-spectroscopic analyses
- (2018) Balkis Eddhif et al. Journal of Proteomics
- Assessing the impact of protein extraction methods for human gut metaproteomics
- (2018) Xu Zhang et al. Journal of Proteomics
- "One-Pot" Sample Processing Method for Proteome-Wide Analysis of Microbial Cells and Spores
- (2018) Bhagyashree Nandakishor Swarge et al. Proteomics Clinical Applications
- Gel-based proteomics in disease research: Is it still valuable?
- (2018) Yong-In Kim et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- S-Trap, an Ultrafast Sample-Preparation Approach for Shotgun Proteomics
- (2018) Milkessa HaileMariam et al. JOURNAL OF PROTEOME RESEARCH
- Assessing the ratio of Bacillus spores and vegetative cells by shotgun proteomics
- (2018) Charlotte Mappa et al. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH
- Human Bone Paleoproteomics Utilizing the Single-Pot, Solid-Phase-Enhanced Sample Preparation Method to Maximize Detected Proteins and Reduce Humics
- (2018) Timothy P. Cleland JOURNAL OF PROTEOME RESEARCH
- Single-pot, solid-phase-enhanced sample preparation for proteomics experiments
- (2018) Christopher S. Hughes et al. Nature Protocols
- The PRIDE database and related tools and resources in 2019: improving support for quantification data
- (2018) Yasset Perez-Riverol et al. NUCLEIC ACIDS RESEARCH
- Proteotyping bacteria: Characterization, differentiation and identification of pneumococcus and other species within the Mitis Group of the genus Streptococcus by tandem mass spectrometry proteomics
- (2018) Roger Karlsson et al. PLoS One
- Identification of microorganisms grown in blood culture flasks using liquid chromatography–tandem mass spectrometry
- (2017) Erwin M Berendsen et al. Future Microbiology
- Evaluation of FASP, SP3, and iST Protocols for Proteomic Sample Preparation in the Low Microgram Range
- (2017) Malte Sielaff et al. JOURNAL OF PROTEOME RESEARCH
- Deciphering Multifactorial Resistance Phenotypes inAcinetobacter baumanniiby Genomics and Targeted Label-free Proteomics
- (2017) Tiphaine Cecchini et al. MOLECULAR & CELLULAR PROTEOMICS
- Typing and Characterization of Bacteria Using Bottom-up Tandem Mass Spectrometry Proteomics
- (2017) Fredrik Boulund et al. MOLECULAR & CELLULAR PROTEOMICS
- Sample Clean-up Strategies for ESI Mass Spectrometry Applications in Bottom-up Proteomics: Trends from 2012 to 2016
- (2017) Ria Marni Tubaon et al. PROTEOMICS
- Next-generation proteomics faces new challenges in environmental biotechnology
- (2016) Jean Armengaud CURRENT OPINION IN BIOTECHNOLOGY
- Augmented recovery of microorganisms from swabs by homogenization: a novel standardizable high-throughput approach
- (2016) Philipp Warnke et al. DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE
- RNA-binding proteins are a major target of silica nanoparticles in cell extracts
- (2016) Géraldine Klein et al. Nanotoxicology
- The unique peptidome: Taxon-specific tryptic peptides as biomarkers for targeted metaproteomics
- (2016) Bart Mesuere et al. PROTEOMICS
- Simultaneous Identification of Multiple β-Lactamases in Acinetobacter baumannii in Relation to Carbapenem and Ceftazidime Resistance, Using Liquid Chromatography-Tandem Mass Spectrometry: TABLE 1
- (2015) Hein Trip et al. JOURNAL OF CLINICAL MICROBIOLOGY
- The Unipept metaproteomics analysis pipeline
- (2015) Bart Mesuere et al. PROTEOMICS
- Proteotyping: Proteomic characterization, classification and identification of microorganisms – A prospectus
- (2015) Roger Karlsson et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Rapid Bacterial Identification, Resistance, Virulence and Type Profiling using Selected Reaction Monitoring Mass Spectrometry
- (2015) Yannick Charretier et al. Scientific Reports
- Proteogenomic Biomarkers for Identification of Francisella Species and Subspecies by Matrix-Assisted Laser Desorption Ionization-Time-of-Flight Mass Spectrometry
- (2014) Emie Durighello et al. ANALYTICAL CHEMISTRY
- Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
- (2014) Nils A Kulak et al. NATURE METHODS
- Suspension trapping (STrap) sample preparation method for bottom-up proteomics analysis
- (2014) Alexandre Zougman et al. PROTEOMICS
- A straightforward and efficient analytical pipeline for metaproteome characterization
- (2014) Alessandro Tanca et al. Microbiome
- Comparison of bottom-up proteomic approaches for LC-MS analysis of complex proteomes
- (2013) Leigh A. Weston et al. Analytical Methods
- Comparison of detergent-based sample preparation workflows for LTQ-Orbitrap analysis of theEscherichia coliproteome
- (2013) Alessandro Tanca et al. PROTEOMICS
- Mass spectrometry: a revolution in clinical microbiology?
- (2012) Jean-Philippe Lavigne et al. CLINICAL CHEMISTRY AND LABORATORY MEDICINE
- Microbiology and proteomics, getting the best of both worlds!
- (2012) Jean Armengaud ENVIRONMENTAL MICROBIOLOGY
- Rapid DNA, RNA and protein extraction protocols optimized for slow continuously growing yeast cultures
- (2012) Kalesh Sasidharan et al. YEAST
- A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa
- (2009) Véronique Dupierris et al. BIOINFORMATICS
- Universal sample preparation method for proteome analysis
- (2009) Jacek R Wiśniewski et al. NATURE METHODS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now