Single-pot, solid-phase-enhanced sample preparation for proteomics experiments

Filter-Based Protein Digestion (FPD): A Detergent-Free and Scaffold-Based Strategy for TMT Workflows

(2018) Ekaterina Stepanova et al.   JOURNAL OF PROTEOME RESEARCH

Parsing and Quantification of Raw Orbitrap Mass Spectrometer Data Using RawQuant

(2018) Kevin A. Kovalchik et al.   JOURNAL OF PROTEOME RESEARCH

Extending the Compatibility of the SP3 Paramagnetic Bead Processing Approach for Proteomics

(2018) Sophie Moggridge et al.   JOURNAL OF PROTEOME RESEARCH

Quantitative proteomic characterization of the lung extracellular matrix in chronic obstructive pulmonary disease and idiopathic pulmonary fibrosis

(2018) Emma Åhrman et al.   Journal of Proteomics

Thermal proteome profiling in bacteria: probing protein state in vivo

(2018) André Mateus et al.   Molecular Systems Biology

Rapid Cue-Specific Remodeling of the Nascent Axonal Proteome

(2018) Roberta Cagnetta et al.   NEURON

Expression of Siglec-E Alters the Proteome of Lipopolysaccharide (LPS)-Activated Macrophages but Does Not Affect LPS-Driven Cytokine Production or Toll-Like Receptor 4 Endocytosis

(2018) Manjula Nagala et al.   Frontiers in Immunology

Evaluation of FASP, SP3, and iST Protocols for Proteomic Sample Preparation in the Low Microgram Range

(2017) Malte Sielaff et al.   JOURNAL OF PROTEOME RESEARCH

Proteomic insights into mannan degradation and protein secretion by the forest floor bacterium Chitinophaga pinensis

(2017) Johan Larsbrink et al.   Journal of Proteomics

CDK12 regulates alternative last exon mRNA splicing and promotes breast cancer cell invasion

(2017) Jerry F. Tien et al.   NUCLEIC ACIDS RESEARCH

Comparison of sample preparation techniques for large-scale proteomics

(2017) Miljan Kuljanin et al.   PROTEOMICS

Proteomic analysis of cell cycle progression in asynchronous cultures, including mitotic subphases, using PRIMMUS

(2017) Tony Ly et al.   eLife

Simple and Integrated Spintip-Based Technology Applied for Deep Proteome Profiling

(2016) Wendong Chen et al.   ANALYTICAL CHEMISTRY

Mass Spectrometry Applied to Bottom-Up Proteomics: Entering the High-Throughput Era for Hypothesis Testing

(2016) Ludovic C. Gillet et al.   Annual Review of Analytical Chemistry

Identification of Maturation-Specific Proteins by Single-Cell Proteomics of Human Oocytes

(2016) Irma Virant-Klun et al.   MOLECULAR & CELLULAR PROTEOMICS

Expanding the Circuitry of Pluripotency by Selective Isolation of Chromatin-Associated Proteins

(2016) Mahmoud-Reza Rafiee et al.   MOLECULAR CELL

Mass-spectrometric exploration of proteome structure and function

(2016) Ruedi Aebersold et al.   NATURE

2016 update of the PRIDE database and its related tools

(2016) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Proteomic Challenges: Sample Preparation Techniques for Microgram-Quantity Protein Analysis from Biological Samples

(2015) Peter Feist et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

PeptideShaker enables reanalysis of MS-derived proteomics data sets

(2015) Marc Vaudel et al.   NATURE BIOTECHNOLOGY

Multidimensional proteomics for cell biology

(2015) Mark Larance et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Ultrasensitive proteome analysis using paramagnetic bead technology

(2014) C. S. Hughes et al.   Molecular Systems Biology

Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells

(2014) Nils A Kulak et al.   NATURE METHODS

Suspension trapping (STrap) sample preparation method for bottom-up proteomics analysis

(2014) Alexandre Zougman et al.   PROTEOMICS

Quantitative Assessment of In-solution Digestion Efficiency Identifies Optimal Protocols for Unbiased Protein Analysis

(2013) Ileana R. León et al.   MOLECULAR & CELLULAR PROTEOMICS

Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin Digestion

(2012) Timo Glatter et al.   JOURNAL OF PROTEOME RESEARCH

SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches

(2011) Marc Vaudel et al.   PROTEOMICS

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS