Conservation of Endophyte Bacterial Community Structure Across Two Panicum Grass Species

One-time nitrogen fertilization shifts switchgrass soil microbiomes within a context of larger spatial and temporal variation

(2019) Huaihai Chen et al.   PLoS One

Associative nitrogen fixation (ANF) in switchgrass (Panicum virgatum) across a nitrogen input gradient

(2018) Sarah S. Roley et al.   PLoS One

Plant compartment and genetic variation drive microbiome composition in switchgrass roots

(2018) Esther Singer et al.   Environmental Microbiology Reports

The genomic landscape of molecular responses to natural drought stress in Panicum hallii

(2018) John T. Lovell et al.   Nature Communications

Evolutionary conservation of a core root microbiome across plant phyla along a tropical soil chronosequence

(2017) Yun Kit Yeoh et al.   Nature Communications

Ecological diversity and co-occurrence patterns of bacterial community through soil profile in response to long-term switchgrass cultivation

(2017) Shubin He et al.   Scientific Reports

Dedicated Energy Crops and Crop Residues for Bioenergy Feedstocks in the Central and Eastern USA

(2016) R. B. Mitchell et al.   BioEnergy Research

Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification

(2016) Josef Wagner et al.   BMC MICROBIOLOGY

Historical and current climate drive spatial and temporal patterns in fungal endophyte diversity

(2016) Hannah Giauque et al.   Fungal Ecology

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant

(2016) Maggie R. Wagner et al.   Nature Communications

The Cacti Microbiome: Interplay between Habitat-Filtering and Host-Specificity

(2016) Citlali Fonseca-García et al.   Frontiers in Microbiology

The gut microbiome in health and in disease

(2015) Andrew B. Shreiner et al.   CURRENT OPINION IN GASTROENTEROLOGY

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

Plant growth promotion induced by phosphate solubilizing endophytic Pseudomonas isolates

(2015) Nicholas Oteino et al.   Frontiers in Microbiology

Primer and platform effects on 16S rRNA tag sequencing

(2015) Julien Tremblay et al.   Frontiers in Microbiology

Network analysis reveals that bacteria and fungi form modules that correlate independently with soil parameters

(2014) Alexandre B. de Menezes et al.   ENVIRONMENTAL MICROBIOLOGY

Mechanism of phosphate solubilization and antifungal activity of Streptomyces spp. isolated from wheat roots and rhizosphere and their application in improving plant growth

(2014) R. Jog et al.   MICROBIOLOGY-SGM

Endophytic bacteria improve nodule function and plant nitrogen in soybean on co-inoculation with Bradyrhizobium japonicum MN110

(2014) Parthiban Subramanian et al.   PLANT GROWTH REGULATION

Host ecotype generates evolutionary and epidemiological divergence across a pathogen metapopulation

(2014) A.-L. Laine et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling

(2014) Hailan Piao et al.   Frontiers in Microbiology

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Proteogenomic Analysis of a Thermophilic Bacterial Consortium Adapted to Deconstruct Switchgrass

(2013) Patrik D'haeseleer et al.   PLoS One

Microbial phylotype composition and diversity predicts plant productivity and plant-soil feedbacks

(2012) James D. Bever et al.   ECOLOGY LETTERS

Characterization of culturable bacterial endophytes of switchgrass (Panicum virgatumL.) and their capacity to influence plant growth

(2012) Ye Xia et al.   Global Change Biology Bioenergy

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Isolation and characterization of indigenous endophytic bacteria associated with leaves of switchgrass (Panicum virgatumL.) cultivars

(2012) F. Gagne-Bourgue et al.   JOURNAL OF APPLIED MICROBIOLOGY

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Glycoside Hydrolase Activities of Thermophilic Bacterial Consortia Adapted to Switchgrass

(2011) John M. Gladden et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Are root exudates more important than other sources of rhizodeposits in structuring rhizosphere bacterial communities?

(2010) Paul G. Dennis et al.   FEMS MICROBIOLOGY ECOLOGY

Impacts of biodiversity on the emergence and transmission of infectious diseases

(2010) Felicia Keesing et al.   NATURE

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Targeted Discovery of Glycoside Hydrolases from a Switchgrass-Adapted Compost Community

(2010) Martin Allgaier et al.   PLoS One

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

PLANT–SOIL–MICROORGANISM INTERACTIONS: HERITABLE RELATIONSHIP BETWEEN PLANT GENOTYPE AND ASSOCIATED SOIL MICROORGANISMS

(2008) Jennifer A. Schweitzer et al.   ECOLOGY