Diverse deep-sea anglerfishes share a genetically reduced luminous symbiont that is acquired from the environment

Depth-Dependent Environmental Drivers of Microbial Plankton Community Structure in the Northern Gulf of Mexico

(2019) Cole G. Easson et al.   Frontiers in Microbiology

Resource acquisition and allocation traits in symbiotic rhizobia with implications for life-history outside of legume hosts

(2019) Katherine E. Muller et al.   Royal Society Open Science

Characterization of the microbiome and bioluminescent symbionts across life stages of ceratioid anglerfishes of the gulf of mexico

(2019) Lindsay L Freed et al.   FEMS MICROBIOLOGY ECOLOGY

Endosymbiont genomes yield clues of tubeworm success

(2018) Yuanning Li et al.   ISME Journal

Ongoing Transposon-Mediated Genome Reduction in the Luminous Bacterial Symbionts of Deep-Sea Ceratioid Anglerfishes

(2018) Tory A. Hendry et al.   mBio

Vibrio fischeri Biofilm Formation Prevented by a Trio of Regulators

(2018) Cecilia M. Thompson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Achieving a multi-strain symbiosis: strain behavior and infection dynamics

(2018) Clotilde Bongrand et al.   ISME Journal

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

The evolution of host-symbiont dependence

(2017) Roberta M. Fisher et al.   Nature Communications

Genome sequence of the sulfur-oxidizing Bathymodiolus thermophilus gill endosymbiont

(2017) Ruby Ponnudurai et al.   Standards in Genomic Sciences

Quantification of bioluminescence from the surface to the deep sea demonstrates its predominance as an ecological trait

(2017) Séverine Martini et al.   Scientific Reports

High Rates of Species Accumulation in Animals with Bioluminescent Courtship Displays

(2016) Emily A. Ellis et al.   CURRENT BIOLOGY

Genome Evolution in the Obligate but Environmentally Active Luminous Symbionts of Flashlight Fish

(2016) Tory A. Hendry et al.   Genome Biology and Evolution

A genomic comparison of 13 symbiotic Vibrio fischeri isolates from the perspective of their host source and colonization behavior

(2016) Clotilde Bongrand et al.   ISME Journal

Breakdown of coevolution between symbiotic bacteriaWolbachiaand their filarial hosts

(2016) Emilie Lefoulon et al.   PeerJ

Repeated and Widespread Evolution of Bioluminescence in Marine Fishes

(2016) Matthew P. Davis et al.   PLoS One

Snapshots of a shrinking partner: Genome reduction in Serratia symbiotica

(2016) Alejandro Manzano-Marín et al.   Scientific Reports

A New Species of the Ceratioid Anglerfish GenusLasiognathusRegan (Lophiiformes: Oneirodidae) from the Northern Gulf of Mexico

(2015) Theodore W. Pietsch et al.   COPEIA

Dispersal and population connectivity in the deep North Atlantic estimated from physical transport processes

(2015) Ron J. Etter et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Lifestyle Evolution in Cyanobacterial Symbionts of Sponges

(2015) Ilia Burgsdorf et al.   mBio

MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

(2015) Dongwan D. Kang et al.   PeerJ

Obligate Insect Endosymbionts Exhibit Increased Ortholog Length Variation and Loss of Large Accessory Proteins Concurrent with Genome Shrinkage

(2014) Laura J. Kenyon et al.   Genome Biology and Evolution

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bacterial quorum sensing and metabolic slowing in a cooperative population

(2014) J. H. An et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Symbiotic Adaptation Drives Genome Streamlining of the Cyanobacterial Sponge Symbiont "Candidatus Synechococcus spongiarum"

(2014) Z.-M. Gao et al.   mBio

Genomic signatures of obligate host dependence in the luminous bacterial symbiont of a vertebrate

(2013) Tory A. Hendry et al.   ENVIRONMENTAL MICROBIOLOGY

Features governing symbiont persistence in the squid-vibrio association

(2013) Eric J. Koch et al.   MOLECULAR ECOLOGY

PATRIC, the bacterial bioinformatics database and analysis resource

(2013) Alice R. Wattam et al.   NUCLEIC ACIDS RESEARCH

PACo: A Novel Procrustes Application to Cophylogenetic Analysis

(2013) Juan Antonio Balbuena et al.   PLoS One

Animals in a bacterial world, a new imperative for the life sciences

(2013) Margaret McFall-Ngai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic divergence between the obligate luminous symbionts of flashlight fishes demonstrates specificity of bacteria to host genera

(2013) Tory A. Hendry et al.   Environmental Microbiology Reports

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

(2013) Nicola Segata et al.   Nature Communications

Convergent and divergent evolution of metabolism in sulfur-oxidizing symbionts and the role of horizontal gene transfer

(2012) Manuel Kleiner et al.   CURRENT OPINION IN MICROBIOLOGY

Draft Genome Sequence of Vibrio fischeri SR5, a Strain Isolated from the Light Organ of the Mediterranean Squid Sepiola robusta

(2012) M. C. Gyllborg et al.   JOURNAL OF BACTERIOLOGY

Symbiosis initiation in the bacterially luminous sea urchin cardinalfishSiphamia versicolor

(2012) P. V. Dunlap et al.   JOURNAL OF FISH BIOLOGY

Recalcitrant Dissolved Organic Carbon Fractions

(2011) Dennis A. Hansell   Annual Review of Marine Science

DECIPHER, a Search-Based Approach to Chimera Identification for 16S rRNA Sequences

(2011) Erik S. Wright et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome Sequence of Photobacterium mandapamensis Strain svers.1.1, the Bioluminescent Symbiont of the Cardinal Fish Siphamia versicolor

(2011) H. Urbanczyk et al.   JOURNAL OF BACTERIOLOGY

The uncultured luminous symbiont of Anomalops katoptron (Beryciformes: Anomalopidae) represents a new bacterial genus

(2011) Tory A. Hendry et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Extreme genome reduction in symbiotic bacteria

(2011) John P. McCutcheon et al.   NATURE REVIEWS MICROBIOLOGY

Evolutionary transitions in bacterial symbiosis

(2011) J. L. Sachs et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary history of anglerfishes (Teleostei: Lophiiformes): a mitogenomic perspective

(2010) Masaki Miya et al.   BMC EVOLUTIONARY BIOLOGY

A complex journey: transmission of microbial symbionts

(2010) Monika Bright et al.   NATURE REVIEWS MICROBIOLOGY

A single regulatory gene is sufficient to alter bacterial host range

(2009) Mark J. Mandel et al.   NATURE

Genomics and Evolution of Heritable Bacterial Symbionts

(2008) Nancy A. Moran et al.   Annual Review of Genetics

RscS Functions Upstream of SypG To Control the syp Locus and Biofilm Formation in Vibrio fischeri

(2008) E. A. Hussa et al.   JOURNAL OF BACTERIOLOGY

The Putative Hybrid Sensor Kinase SypF Coordinates Biofilm Formation in Vibrio fischeri by Acting Upstream of Two Response Regulators, SypG and VpsR

(2008) C. L. Darnell et al.   JOURNAL OF BACTERIOLOGY

Absence of Cospeciation Between Deep-Sea Mytilids and Their Thiotrophic Endosymbionts

(2008) Yong-Jin Won et al.   JOURNAL OF SHELLFISH RESEARCH

Learning how to live together: genomic insights into prokaryote–animal symbioses

(2008) Andrés Moya et al.   NATURE REVIEWS GENETICS

Whole-genome mutational biases in bacteria

(2008) P. A. Lind et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fine-scale cospeciation between Brachycaudus and Buchnera aphidicola: bacterial genome helps define species and evolutionary relationships in aphids

(2008) E. Jousselin et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES