Asexual reproduction reduces transposable element load in experimental yeast populations

Insertion polymorphisms of mobile genetic elements in sexual and asexual populations of Daphnia pulex

(2017) Xiaoqian Jiang et al.   Genome Biology and Evolution

McClintock: An Integrated Pipeline for Detecting Transposable Element Insertions in Whole-Genome Shotgun Sequencing Data

(2017) Michael G. Nelson et al.   G3-Genes Genomes Genetics

Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements

(2016) Amir Szitenberg et al.   Genome Biology and Evolution

PoPoolationTE2: Comparative Population Genomics of Transposable Elements Using Pool-Seq

(2016) Robert Kofler et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sex speeds adaptation by altering the dynamics of molecular evolution

(2016) Michael J. McDonald et al.   NATURE

Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles

(2016) Raúl Castanera et al.   PLoS Genetics

No evidence that sex and transposable elements drive genome size variation in evening primroses

(2015) J. Arvid Ågren et al.   EVOLUTION

No Accumulation of Transposable Elements in Asexual Arthropods

(2015) Jens Bast et al.   MOLECULAR BIOLOGY AND EVOLUTION

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Genetic and Epigenetic Changes Involving (Retro)transposons in Animal Hybrids and Polyploids

(2013) I.R. Arkhipova et al.   CYTOGENETIC AND GENOME RESEARCH

Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations

(2013) Gregory I. Lang et al.   NATURE

Asexual evolution: do intragenomic parasites maintain sex?

(2012) BERNARD CRESPI et al.   MOLECULAR ECOLOGY

Evolutionary Genomics of Transposable Elements in Saccharomyces cerevisiae

(2012) Martin Carr et al.   PLoS One

The struggle for life of the genome's selfish architects

(2011) Aurélie Hua-Van et al.   Biology Direct

Co-evolution between transposable elements and their hosts: a major factor in genome size evolution?

(2011) J. Arvid Ågren et al.   CHROMOSOME RESEARCH

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS